| Submitter | | Handle | SC_SNP | | Submitter SNP ID | SC-CHR1_NA17109-200402.chr1.NT_004671.15_849839 | | RefSNP(rs#) | rs12057142 | | Submitted Batch ID | SC-CHR1_NA17109-200402 | | Submitted Date | Feb 20, 2004 | | Publication Cited | [1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases | | First entry to dbSNP | Feb 20 2004 12:00:00:000AM |
| | Resource Links | | GenBank Accession | NT_004671
| | Submitted Gene Name | N.D | | Submitted Gene ID | N.D. | | Submitted SNP Synonyms | N.D | | Submitted linkout | N.D |
| | Assay | | Species | Homo sapiens | Molecular
Type | Genomic | | Method | CHR1_NA17109 | | Ascertainment Samplesize | 2 | | Population | N.D. |
| | Allele | | Observed Allele | C/T | | Ancestral Allele | N.D. | | Allele Origin | N/A | | SNP Class | SNV | | CpG Code | Unknown |
| | | Variation | | Frequency Submission | N.D. | | Genotype Summary | N.D. | | Genotype Submission | N.D. | | Haplotype | N.D. |
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| Comment | | sequence position quality1Chr_1_17109_3-14j06.p1k -438 23 |
>gnl|dbSNP|ss18135784|allelePos=316|len=816|taxid=9606|alleles='C/T'|mol=Genomic TAAGGAAGAC TTGGCAATTC CAGTGGCCGC TACACTATAA CTATTAAAGA TATTTCAAGA
ATACAGTAAC TATTGGGAGC AGCAACTGTT TCTGGAAAGC TTAAAAAGAC AGCACATAAG
CTCAGGATTT TAAATTATCA ACGTAGCTCA TTCAGAGTAT CAGAAATCTA GTGTGACTTA
CCTCATAAAA TTTATCTTTT ggccaggcgc ggtggctcat gcctgtaatc ccagcacttt
agaaggctga ggtgggtgga tcatttgaga tccggagttc aagatcagcc tggccaacat
ggtgaaacca ggtct
Y
tactgaaaat acaaaaaaaa ttagccaggt gtggtggtgg gcgcctgtag tcccagctac
ttgggaggct gagacaggag aatctcttga accccggagg tggaggttgc agtgagccaa
aattgtgcca ctgcactcca gcctgggcga cagagcaaga ctctgcctaa aaaaaaaaaa
aaaaaaaaaa aaaaaaaaaA TTATCTTTTA ATCACAGGCC AATGTCTGAC CCTTCAAGTT
GCTAAAGTAA CATTTCATTT CTTTATAATA AGCATTTATT GTCTTTTTAA TGCAAGGCAT
TACTCTAAGC AATGAAATTA AGTTGAATTC TCAGTGATAG GAGGTAAACT ACAGATGAAC
AAAATAAATG AGAAGTTGTG TACTATGTCA AATGTGGAAA CATTCTACGA AGAAAAATAA
AGGTTAGGAG TTCCTATGTA ATTCCCAGGG AGCGATATCA TTTTAAGTAG GAAGATCAGA
GACTGTTTCG TTTGGAAAGG
There is no frequency submission for ss18135784.
No sufficient data to compute Hardy-weinberg probability for ss18135784.
There is no individual genotype data for ss18135784.
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