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Submitted SNP(ss) Details: ss18243009           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHR1_NA07340-200402.chr1.NT_004433.16_1238577
RefSNP(rs#)rs12116425
Submitted Batch IDSC-CHR1_NA07340-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR1_NA07340
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 6
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS1C_2-156j10.p1k -208 51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss18243009|allelePos=501|len=1001|taxid=9606|alleles='C/T'|mol=Genomic
 ATTTATCAGA TTTGTTAatt ttgtagaatc tgctagataa tatatttatc agataattct
 aacatacctg ccatcttgtt tttggtatct attgattccc ttttttccat tcaatttcag
 atcttcctgg ttttcggtag aatgagtgat atttttattg ataattaaac attttggtta
 ttacattgtg agattctaga tcttatttat accttctgtt ttagctggtt tcttcggaca
 ctgctttgac agggaaagtg ggtcaccacc ttgttattgc caagtgggag tagaagtctg
 tgttccccct tagcctcctt tgatagttaa aaatcctgac tcttcactag gcctccccta
 ataccagtcc agcaggaagg agaggggcat cacattactg ttgggtgggg gtagatagaa
 gtccaggctt ccaacatggt ctccactgac aactgaagac aacttcatta ccacctgatg
 gagataaaag ctctagctcc
 Y
 taataagcct tctctgacac tatggcagtg ggggagttgg ggaccctctt tataactggg
 caagggtaaa agtctgaact ctctgcttgg cctttgctgg tagggatgtg agtggaggta
 cagttttacc tgtgatactt gttgaagtag agtggtagtt gtgtaaaagt tttctggttt
 gctagattcc ccttttcctt ggcttttgta ggaacttttg tgtcagcatt tgatggcaat
 tccaggttgc tggcttcttc atctctaggt ctggagtata taaagcaaaa acaaaacgaa
 acaaaaacag aagatgaagc aaacaacccc agggaactca ccatcatgta atcatgtgat
 tctttggatc ttaaggtccc tggacagact gcctcctttt tgtcattgtt tagagtcttc
 tgatatttgt tttatatata actcttgggg gggggtggtt agtgtatcta gtaggaggaa
 taggtaaaag tacatctact

  Submitted Frequency for ss18243009 back to top
There is no frequency submission for ss18243009.


  dbSNP summary of Genotypes for ss18243009 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU118118C=0.83050847
T=0.16949153C/C=0.72881359
C/T=0.20338982
T/T=0.06779661
Pr(chiSq=4.545,df=1)
=0.050		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		9090C=0.94444442
T=0.05555556C/C=0.88888890
C/T=0.11111111
Pr(chiSq=0.017,df=1)
=1.000		Genotype
Freq.
HapMap-YRI120120C=0.78333336
T=0.21666667C/C=0.61666667
C/T=0.33333334
T/T=0.05000000
Pr(chiSq=0.019,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss18243009 back to top
There is no individual genotype data for ss18243009.

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