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Submitted SNP(ss) Details: ss18243014           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHR1_NA07340-200402.chr1.NT_004547.16_1057983
RefSNP(rs#)rs12116428
Submitted Batch IDSC-CHR1_NA07340-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_NA07340
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 11
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS1C_2-816h08.q1k 432 56

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss18243014|allelePos=501|len=1001|taxid=9606|alleles='C/T'|mol=Genomic
 ccaaatgttt aaaaatgaac attatttcac cctatgtctt tcagaaaata gaagagaagg
 gaacactttt caactcattt tatgaagtga gggttatatt gttattgaaa cccagaaaaa
 gacaataaca aaaaatccaa caacaactat aacctaatat cgcttatgaa tataggttaa
 aaaaacctta acaaactatt gataaataga attcagcaac acaaaaaata aattatgatc
 aaatggggct tattccaaga atgaaaggat ggcccaatat ttgaaaatta accaatgtaa
 cctatcccat tcacaggtta aagaagaaaa attgcatggt tatatcaatc aatgcagaaa
 atgtttttac aaaatccaac acccattcat aatataaatt cttagaaaaa tgacatggga
 acatcctcaa cttgacaaaa aagatctaca aaaaaaccta taacaaacat gagacttagt
 ggtaagaaac tggatacttt
 Y
 ttccttagaa tgagaataag aaaggatgtc tgatctcttt ttcaatatag taatgaaagt
 tctagccagg taaataagac acataaagaa aattgaagac acaaagattg aaaaggaaaa
 actgtccctg tttgcaggtg gcataagaaa atcccaaaga atctacaaga gaactaataa
 gttcagcaag gttgcaagat attagataaa catataaaca tcaattgtat ttttatatgt
 ccacaatgaa cataggacac caaaatttaa aatgcaatat gattcataat cacttaaaat
 aaaatatgta ggtgtaactc ttacaaaaca tgtacaagat ttgtatgctg aaaatgacaa
 aatcttgaag acagaaatgg aagctctaaa tatatggaaa gacatacagt attcatagat
 ttaaaaactc acatagtaaa tatgttaatt ttcccttaat tgagatacag ttttagcaca
 aATTGTATCA AAGTATCAGC

  Submitted Frequency for ss18243014 back to top
There is no frequency submission for ss18243014.


  dbSNP summary of Genotypes for ss18243014 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226C=0.92920351
T=0.07079646C/C=0.87610620
C/T=0.10619469
T/T=0.01769911
Pr(chiSq=4.203,df=1)
=0.050
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686C=0.84883720
T=0.15116279C/C=0.72093022
C/T=0.25581396
T/T=0.02325581
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-JPT172172C=0.87790698
T=0.12209302C/C=0.77906978
C/T=0.19767442
T/T=0.02325581
Pr(chiSq=0.522,df=1)
=0.479
Genotype
Freq.
HapMap-YRI100100C=0.99000001
T=0.01000000C/C=0.98000002
C/T=0.02000000
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHB8282C=0.93902439
T=0.06097561C/C=0.87804878
C/T=0.12195122
Pr(chiSq=0.020,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHD168168C=0.89880955
T=0.10119048C/C=0.82142860
C/T=0.15476191
T/T=0.02380952
Pr(chiSq=1.870,df=1)
=0.200
Genotype
Freq.
HAPMAP-GIH176176C=0.86931819
T=0.13068181C/C=0.73863637
C/T=0.26136363
Pr(chiSq=0.486,df=1)
=0.527
Genotype
Freq.
HAPMAP-MEX100100C=0.97000003
T=0.03000000C/C=0.94000000
C/T=0.06000000
Pr(chiSq=0.003,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI176176C=0.94318181
T=0.05681818C/C=0.88636363
C/T=0.11363637
Pr(chiSq=0.035,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss18243014 back to top
There is no individual genotype data for ss18243014.

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