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Submitted SNP(ss) Details: ss18243020           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHR1_NA07340-200402.chr1.NT_032977.6_12512795
RefSNP(rs#)rs12116432
Submitted Batch IDSC-CHR1_NA07340-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR1_NA07340
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS1C_2-522g15.p1k 251 51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss18243020|allelePos=501|len=786|taxid=9606|alleles='A/T'|mol=Genomic
 Gttttatttt gagatgtaag ccactgcaag tttttgaagt gacatgatgt gacaaatgat
 ttttaaagga tttattaaga ctataggaaa ggcaaaaatg gagatgtgga atcaagttgg
 gaggctacta aagtaatcca gataacagac aatggtggct tagatgaggg tgatagtggt
 ggagttaaac atttaagttc tgcatatatt tgcagagccc acaggattta ctcattaaat
 atggatgtaa acgagataag tcaaggataa ttccaaggtt tctggctcta acaactggaa
 agattttcca tttactgaga tagggaagac tgcagaaaga gcaggtttgg gtggggaggg
 taggatcagt tgtgcaattt aaaacatatt aagtttctga tgtatatgag acatctaagt
 agacatgatg ggccagcagt tagatattca agtctggagt tcagggaaag ggaggagctg
 gaaatataaa tctgggagtc
 W
 aacgtataga caatataata tagccatata atatagtcaa tataatagtc ataatactgg
 atgagatcac caaaggagta gaatgGATCC CATATAGAGA CAGTTGATTT GACCCGATTC
 TGCAGTCAAT CTCTATTCCT GGCAACCTGG AGAGTATGGA TAGCTTACTA CTCTACTACT
 ATGACCTCAT TTCTGGATAA AGTAAGTAAG GCAAATGATC ATATTTCCTA AATCAAAATT
 CAAATAGATG ATTTTTGCTT GCTTCTGGAT ATAAAGAACA GTCTG

  Submitted Frequency for ss18243020 back to top
There is no frequency submission for ss18243020.


  dbSNP summary of Genotypes for ss18243020 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU118118A=0.95762712
T=0.04237288A/A=0.91525424
A/T=0.08474576
Pr(chiSq=0.010,df=1)
=1.000		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		9090A=0.94444442
T=0.05555556A/A=0.88888890
A/T=0.11111111
Pr(chiSq=0.017,df=1)
=1.000		Genotype
Freq.
HapMap-JPT8888A=0.97727275
T=0.02272727A/A=0.95454544
A/T=0.04545455
Pr(chiSq=0.001,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss18243020 back to top
There is no individual genotype data for ss18243020.

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