NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss18404540           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHR9-12_NA11321-200402.chr1.NT_034410.5_2009167
RefSNP(rs#)rs10900516
Submitted Batch IDSC-CHR9-12_NA11321-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR9-12_NA11321
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS9A_2-203l02.q1k -325 51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss18404540|allelePos=322|len=709|taxid=9606|alleles='G/T'|mol=Genomic
 GTACTCCTCA AAATCCAGAT TGTTTGTGCA TACATTTAAA AAAAAAAAAA TCAATGGAAA
 TTTCCACCTT TGTTCGAACA CATAAAGTAT GCCATGAGCA ATATAACATC ACAAACGTAC
 TGTGACAAAC CATTAATAAA GAAGGATTAC TAAgccaggt gtggtggtgc atgcctgtag
 cccagctatg caggaggctg aggcaggagg atcacttgag cccgggagtt tgagtccacc
 ctgggtaaca caccaagact ccatctctaa aaaaTTAAAT TAAAGGATTA CTGAAAGATC
 TCATTTCTAA AAAAAGAAAA A
 K
 AAAAAGATCA CTGAAGTCAG ACATGATATT TTAATTTTGT ATTTTGAAAA GTCAGTATAT
 AAATAAGAAA AAATTATTTT AGAAATTATG TGAAAATCCA CTCTTGGGTG GAGTAAATGC
 AATGGTTTGC CAGCACTGGC TCTGAGCCAA CTGTGCACAT CCTTTCTGAA CTCTAAGGTG
 GTAGCTTGAA ATCAGCCACA GGAGGAGTAA CTAATTTATA TCAAAGAATT TGatataaaa
 ttctaattta tattagaatt ttatttataa tttatatttG CAgcaaatgc tacaaattca
 gcgctccccc ccacccccac cccagagatc ctggttgtta aacatttcta gcacacgact
 gAGTGGATAG CGACCAGAGC AGAAGGA

  Submitted Frequency for ss18404540 back to top
There is no frequency submission for ss18404540.


  dbSNP summary of Genotypes for ss18404540 back to top
No sufficient data to compute Hardy-weinberg probability for ss18404540.


  Submitted individual genotype for ss18404540 back to top
There is no individual genotype data for ss18404540.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement