Submitted SNP(ss) Details: ss184957334

Submitted SNP(ss) Details: ss184957334

Submitter
Handle	SNP500CANCER
Submitter SNP ID	CGFID_17361
RefSNP(rs#)	rs12777595
Submitted Batch ID	SNP500CANCER_01_04_10_MSMB
Submitted Date	Feb 01, 2010
Publication Cited	N.D.
First entry to dbSNP	Feb 1 2010 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	CGFID_17361

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	ROCHE/454 NEXT-GENERATION SEQUENCING
Ascertainment Samplesize	69
Population	N.D.

Allele
Observed Allele	G/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 1
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CCGGAGTGTT GGGGTGATCA GACCCAACAC CAGATCGTGG GAGCGACAAA GTCTGGCGGA
 GTCAAAGGAA TGAGAAAAAG ACAGTTTGAG AGAGACAGTG
 S
 GACCAGGGGG CCACCGCAAG TGTGGAGGCT GCAAAGGCCC TGAGCTTTGC GAGCCCATGC
 TGTTTATTGG TGCTCAAACA AAGAACCCGT GAGGATGTGG

Submitted Frequency for ss184957334

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
Pop2 - MULTI-NATIONAL	140				G/G=0.71428603 C/G=0.22857100 C/C=0.04285700 N/N=0.01428600		SNP500CANCER_01_04_10_MSMB	SNP500CANCER

dbSNP summary of Genotypes for ss184957334

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
Pop2 - MULTI-NATIONAL	138	138	G=0.84057969	C=0.15942030	G/G=0.72463769 C/G=0.23188406 C/C=0.04347826	Pr(chiSq=1.254,df=1) =0.273	Genotype Freq.

Submitted individual genotype for ss184957334

There is no individual genotype data for ss184957334.

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