Submitted SNP(ss) Details: ss184957347

Submitted SNP(ss) Details: ss184957347

Submitter
Handle	SNP500CANCER
Submitter SNP ID	CGFID_17374
RefSNP(rs#)	rs57858801
Submitted Batch ID	SNP500CANCER_01_04_10_MSMB
Submitted Date	Feb 01, 2010
Publication Cited	N.D.
First entry to dbSNP	Feb 1 2010 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	CGFID_17374

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	ROCHE/454 NEXT-GENERATION SEQUENCING
Ascertainment Samplesize	61
Population	N.D.

Allele
Observed Allele	A/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 1
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 ATTTGTGGGT GTCTACATGG GGATATCTTG TGCGTGTGGC ATGTAGGGAA GGAAATGGTG
 TAATGGCATG TATGTATAGT TTGTGTGTGC ATTCAGTGGG
 W
 GGTGGGTGTG TGTGCCATGG CTGTGTGTGT ATGGTGTCTG TATATGTGTT TGCTGTTTAT
 GTTGTGTGTG TGGGGTGTGC TGGGTGTGTG TTGGGGGAGT

Submitted Frequency for ss184957347

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
Pop2 - MULTI-NATIONAL	140				A/T=0.40000001 A/A=0.24285699 T/T=0.22857100 N/N=0.12857100		SNP500CANCER_01_04_10_MSMB	SNP500CANCER

dbSNP summary of Genotypes for ss184957347

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
Pop2 - MULTI-NATIONAL	122	122	A=0.50819671	T=0.49180329	A/T=0.45901638 A/A=0.27868852 T/T=0.26229507	Pr(chiSq=0.407,df=1) =0.527	Genotype Freq.

Submitted individual genotype for ss184957347

There is no individual genotype data for ss184957347.

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