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Submitted SNP(ss) Details: ss18607172           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHR9-12_NA17119-200402.chr1.NT_004559.11_4842799
RefSNP(rs#)rs12238978
Submitted Batch IDSC-CHR9-12_NA17119-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR9-12_NA17119
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS912AA-1708c21.p1k 536 51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss18607172|allelePos=501|len=725|taxid=9606|alleles='G/A'|mol=Genomic
 catcagtcaa tatatgtaag tacattggtt cagtctggaa aggcaggaaa acctgaagca
 aaggcagaaa gattcaaagt ggggaggggc cttcctggtc acaaataggt gaaacacaaa
 cagttgcatt cttttgagtt tctgatttgc ctttccaaag gaggcaatca gatatgcatc
 tatttcagtg agcagacggg tgactttaaa tagaatggga ggcaggttgg ccctaagcag
 ttcccagctt gacttttctc tttagccaag tgactttggg gccccaagat ttattttcct
 ttcacGGGTA TATTTAGATA TTTAGAATCC TAATTTTTTG AGCAATTTTG ACATCTGAAA
 TATTGAAAAG ATTACCATTA CAATTGCATT TAAAATGAAA CATTGAGTAA TTGGTTTTGA
 CATGAGTTTT TAAGTTGAAA GGTTTAAAAA TTATGCAAAG GCTATCCATA ATATTGGATA
 ATACAGTTAG CTTAATATTC
 R
 CCATCTTTAA GGGTAGCAGT TAATTTTGTG AACGTTATCT CTGCCTGCGT GGAGGGTTGC
 AGTGAGAGAG GCCAGGGCTC CTGGATGTTG AGGTATGGAT GGTAGCCCAG CCCACCCATG
 CTGTCTCTGG CCCTGCAGGT GACCACAGTC CCTCATTTTT GTCTGTGGTG GCGATGGTAT
 CTGTGCAAGG CTGTGGtttt tttttttttt tttctttttt AATC

  Submitted Frequency for ss18607172 back to top
There is no frequency submission for ss18607172.


  dbSNP summary of Genotypes for ss18607172 back to top
No sufficient data to compute Hardy-weinberg probability for ss18607172.


  Submitted individual genotype for ss18607172 back to top
There is no individual genotype data for ss18607172.

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