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Submitted SNP(ss) Details: ss19058860           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHRX_NA11321-200402.chr1.NT_032977.6_33918613
RefSNP(rs#)clustering in process
Submitted Batch IDSC-CHRX_NA11321-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHRX_NA11321
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityXChr_X_11321_2-375o05.p1k -415 56

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss19058860|allelePos=501|len=1001|taxid=9606|alleles='C/T'|mol=Genomic
 gaagtgctta aaggagctga tggagctgaa aaccaaggct cgagaactac gtgaggaatg
 cagaagcctc aggagccgat gcgatcaact ggaagaaagg gtatcagcaa tggaagatga
 aatgaatgaa atgaagcgag aagggaagtt tagagaaaaa agaataaaaa gaaatgagca
 aagcctccaa gaaatatggg actatgtgaa aagaccaaat ctacgtctga ttggtgtacc
 tgaaagtgat gtggagaatg gaaccaagtt ggaaaacact ctgcaggata ttatccagga
 gaacttcccc aatctagcaa ggcaggccaa cgttcagatt caggaaatac agagaacgcc
 acaaagattc tcctcgagaa gagcaactcc aagacacata attgtcagat tcaccaaagt
 tgaaatgaag gaaaaaatat taagggcagc cagagagaaa ggtcgggtta ccctcaaagg
 aaagcccatc agactaacag
 Y
 ggatctctcg gcagaaaccc tacaagccag aagagagtgg gggccaatat tcaacattct
 taaagaaaag aattttcaac ccagaatttc atatccagcc aaactaagct tcataagtga
 aggagaaata aaatacttta tagacaagca aatgctgaga gattttgtca ccaccaggcc
 tgccctaaaa gagctcctga aggaagtgct aaacatggaa aggaacaacc ggtaccagcc
 gctgcaaaat catgccaaaa tgtaaagacc atccagacta ggaagaaact gcatcaacta
 acgagcaaaa tcaccagcta acatcataat gacaggatca aattcacaca taacaatatt
 aactttaaat ataaatggac taaattctgc aattaaaaga cacagactag caagttggat
 aaagagtcaa gacccatcag tgtgctgtat tcaggaaacc catctcacgt gcagagacac
 acataggctc aaaataaaag

  Submitted Frequency for ss19058860 back to top
There is no frequency submission for ss19058860.


  dbSNP summary of Genotypes for ss19058860 back to top
No sufficient data to compute Hardy-weinberg probability for ss19058860.


  Submitted individual genotype for ss19058860 back to top
There is no individual genotype data for ss19058860.