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Submitted SNP(ss) Details: ss19068694           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHRX_NA17119-200402.chr1.NT_028050.13_792722
RefSNP(rs#)rs12385692
Submitted Batch IDSC-CHRX_NA17119-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHRX_NA17119
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 9
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityXSNP51833-67g08.p1k -268 43

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss19068694|allelePos=367|len=733|taxid=9606|alleles='G/A'|mol=Genomic
 CTGGGAAAGA GCCTTGATTT ACACTTTAGT ATGAGATAGA AGGCCACCTT GTTAAAAATT
 TTTAAATTTC CAAAATAATC CATATTAAAT TAGGGTTTGC TGATCAGTAC TTTGTCTTTA
 GCTACCtttt tatatttaaa aaattaaata tcaattatgt ttttataagc ttaaaaaatt
 aaaGAACCTT CAAAGAAAAA AAAAGACAGC AAGGGCATTG GAATTAATGT TTTAAACAAT
 CAAAATGCTT AGTTATAaat cccagcactt caggaatagg gggattgctt gaggtctaga
 gtttgagacc agtctggaca acatagtgag accccatttc tacaaaaaat ttaaaaatca
 agttga
 R
 tgtgatactg catgcctgta gtgttagctt cttgggaggc tgaggtggga ggatcatacg
 tgagtctagg agttcagggc tgtagtaagc tatgatcacg ccactgcatt ccagccaggg
 tgacagagga agatcctgtc tcttaaaaca aaaaacaaaa aaaaaaCCCT TAGGTATAAA
 TATAAGCTTA TAAGTTTTAT TATGTAGTAA TCCTGCCTAT GAATACAAAC AAAACAAATA
 GATTATTGTG TTTTAATACA TAAAGATGAA AATTTTCATA AAAAATTACA TTTTGAATAA
 TATGTAAATG TTTACCTGTG TTTCTCCCCC CTCTTCCCTT TAGGGCCATT TTGAGTGCCA
 GATCTA

  Submitted Frequency for ss19068694 back to top
There is no frequency submission for ss19068694.


  dbSNP summary of Genotypes for ss19068694 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-YRI226226G=0.93805307
A=0.06194690G/G=0.88495576
A/G=0.10619469
A/A=0.00884956
Pr(chiSq=0.841,df=1)
=0.371
Genotype
Freq.
HAPMAP-ASW9898G=0.93877554
A=0.06122449G/G=0.87755102
A/G=0.12244898
Pr(chiSq=0.025,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180G=0.95555556
A=0.04444445G/G=0.91111112
A/G=0.08888889
Pr(chiSq=0.017,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK284284G=0.98591548
A=0.01408451G/G=0.97183096
A/G=0.02816901
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss19068694 back to top
There is no individual genotype data for ss19068694.

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