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Submitted SNP(ss) Details: ss19068712           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHRX_NA17119-200402.chr1.NT_079484.1_5006857
RefSNP(rs#)rs12385706
Submitted Batch IDSC-CHRX_NA17119-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHRX_NA17119
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 8
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityXSNP51833-56a01.q1k -604 40

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss19068712|allelePos=501|len=1001|taxid=9606|alleles='T/C'|mol=Genomic
 TATTCACCCC ATCTCccaca gaggtgtttg tggagaccat gtaggaacct gggatttcca
 ccgtcacttg gaagaagcaa ggcactctgt ggtgtcaaag acacttactg cagagccagg
 actttcacca cttcccagag gtaataaaaa tgaagtagag gttcctcttc aaagggactt
 ttctcccagt caaattgaga ataaatagta acctctctga gaagcaaaat ttactcaaat
 acctgtgcta atattcttaa atatctgcta gccataataa agaaatcaat atactttgtg
 tttttagatc ctacatttta gcctaagata tctgctctgg catgcctaaa caggtccaag
 taagcattag ggcatagcct gctcctcttc cttatttgga ggtgtttttg cctttctcag
 cattccacaa attacttcct ctattccttt gttctcctct gctttcacct cttttggaaa
 gttctaagtt gctagtcagt
 Y
 gggacaagga tagaatgtga ggtcttgttc cagctgatgg aaactggaca caaccgtagg
 gtggatgcat caggttataa atgaccctgt ctcctttttt catgtgtgct cttgtggcaa
 ggctgctagc aagtggcacc ctttctgcag aaagtaaatt agccttgctg agagatcctt
 tgtctcagtg tcaattcttg tgacaccgaa tgcccattcc caacaTAATC CTCAGtgatg
 tcagtggagg ctaagggagc cctaaagggg caccccttca gaatggtcaa ggcagggtaa
 gcaaaagaga gtggggagct ggaaatccta cccagcccag cagtaaggag gattctcttg
 ctgtccctga agtcgacaga ggctgaatgg agaatctgga cttccagcct aactagtagt
 aaacgtcagc actcccactt tcccctgttg cagcagtgtt agaagaagcc aggtaaaaca
 gaaggtttaG GCCGGGCGTG

  Submitted Frequency for ss19068712 back to top
There is no frequency submission for ss19068712.


  dbSNP summary of Genotypes for ss19068712 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-YRI226226T=0.83628321
C=0.16371681T/T=0.69026548
C/T=0.29203540
C/C=0.01769911
Pr(chiSq=0.500,df=1)
=0.527
Genotype
Freq.
HAPMAP-ASW9898T=0.85714287
C=0.14285715T/T=0.73469388
C/T=0.24489796
C/C=0.02040816
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180T=0.91666669
C=0.08333334T/T=0.84444445
C/T=0.14444445
C/C=0.01111111
Pr(chiSq=0.268,df=1)
=0.655
Genotype
Freq.
HAPMAP-MKK284284T=0.84154928
C=0.15845071T/T=0.71126759
C/T=0.26056337
C/C=0.02816901
Pr(chiSq=0.075,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss19068712 back to top
There is no individual genotype data for ss19068712.

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