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Submitted SNP(ss) Details: ss19068717           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHRX_NA17119-200402.chr1.NT_004487.16_8386626
RefSNP(rs#)rs12385707
Submitted Batch IDSC-CHRX_NA17119-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHRX_NA17119
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 9
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityXSNP51833-42l19.p1k 604 51XSNP51833-42l19.p1kw 574 40

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss19068717|allelePos=201|len=701|taxid=9606|alleles='G/A'|mol=Genomic
 ACTTAGGACT TCCTGAGCTA AAGGAGAAAA AAAATATGGT GGATCGTTCA AAACTCCTTC
 CTACTTCCCT TCAGAATGAG TTCATTCCCA AAGAAGTTCT TCTTTCTCTG ACCTATGCGG
 CCAATGCTGG TCCTTGTCCT GAAAACTTAC TACCTCCTAA GAAAATTAAA ACCCCAAAGG
 TTTGTATGTA CATATGTAGA
 R
 TAATGGGGAA CATTATTTTT TGGGCATCTG ATTATTCTTT AAGTATTTAT TATGCACATA
 TTATATATTC CAGATAGCCT TAAAAATTTT AAGATTGAtt gagacagggt cttactactg
 tggcccaggc tggagagtag tggcctgatc attgctcact gcagcctcga ctaccctggc
 tcaggtgatc ctcccacctc agcttcctga gtagctggga ctacaggtct gtgccaccac
 acctggctaa tttttgtatt tttcatagag acggagtttc gccatgttgc ctatgctggt
 ctcaaattcc tgggctcaag caatccaccc gccttagcct cccaaagtgc tggaatttca
 agtgtgagcc aacatgcctg gccTTAAAAA ATTTTTTTAG Gctgtaatcc cagcactttg
 ggaggctgag gcaggcagat cacgaggtca ggagatcaac catcctggcc aacatcatga
 aaccctgtct ctactaaaaa

  Submitted Frequency for ss19068717 back to top
There is no frequency submission for ss19068717.


  dbSNP summary of Genotypes for ss19068717 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226G=0.99557525
A=0.00442478G/G=0.99115044
A/G=0.00884956
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-YRI224224G=0.94642860
A=0.05357143G/G=0.90178573
A/G=0.08928572
A/A=0.00892857
Pr(chiSq=1.599,df=1)
=0.251
Genotype
Freq.
HAPMAP-CHD168168G=0.99404764
A=0.00595238G/G=0.98809522
A/G=0.01190476
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-GIH176176G=0.99431819
A=0.00568182G/G=0.98863637
A/G=0.01136364
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI176176G=0.99431819
A=0.00568182G/G=0.98863637
A/G=0.01136364
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss19068717 back to top
There is no individual genotype data for ss19068717.

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