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Submitted SNP(ss) Details: ss20736314           
Submitter
HandleSSAHASNP
Submitter SNP IDWGSA-200403-chr11.chr11.NT_033903.6_4369983
RefSNP(rs#)rs12785234
Submitted Batch IDWGSA-200403-chr11
Submitted DateMar 19, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPMar 19 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWGSA-200403
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence positionAADD01115942.1 968

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss20736314|allelePos=501|len=701|taxid=9606|alleles='T/A'|mol=Genomic
 aacaaaaaag cagtggaaaa gtaaattccc cctctctcct ctgaagttga gatatctttc
 tctcttcctt tgacatcaca tctccagggt ctcctttgga gtctgggatt tgcattagta
 gccccttaat ttatcaggtg cttggcctca tgttgagagt tacaccgttg gctttcttgg
 tttggaggcc tttggactta gactgaacca tgctcaggaa gtcaggattc tgtgattgtt
 gagcttgcag atgtcacatt atgggacttc tcagcctcca taatctcatg agccagttct
 cctgataaac ccactctcac ctacccatct gttaatatct gtccatctat tcatctatct
 gtctatctat tcatacatcc tcctggttct gtctctctag agaaccccaa ctaaTAaaga
 tggtaaactt aatgtcatat gctttttacc acaataaaaa aGTATGAAAG CAAATAGCAC
 ATAAAGGCAA ATAAACTCCA
 W
 ATCGAATTAT AAGTGTTTAG AATTGGAAGT GCTTTGATGT TCAACTCAAA ATTTATCTCC
 CTAGGATTCT ATGCATCTTA GAGTTTGTTC TCTGACAGCA TCTCCTGAAA TATGATTTAC
 TTTCATTTTA GCTTAACATT TTAGCATAGC TATTTTAATG AGTTTACTTG AATCATTTCA
 AAGAAAACCC AGAGAAAAAT

  Submitted Frequency for ss20736314 back to top
There is no frequency submission for ss20736314.


  dbSNP summary of Genotypes for ss20736314 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU110110T=0.72727275
A=0.27272728T/T=0.52727270
A/T=0.40000001
A/A=0.07272727
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8282T=0.93902439
A=0.06097561T/T=0.87804878
A/T=0.12195122
Pr(chiSq=0.020,df=1)
=1.000
Genotype
Freq.
HapMap-JPT8080T=0.94999999
A=0.05000000T/T=0.89999998
A/T=0.10000000
Pr(chiSq=0.011,df=1)
=1.000
Genotype
Freq.
HapMap-YRI114114T=0.93859649
A=0.06140351T/T=0.87719297
A/T=0.12280702
Pr(chiSq=0.029,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss20736314 back to top
There is no individual genotype data for ss20736314.

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