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Submitted SNP(ss) Details: ss20736315           
Submitter
HandleSSAHASNP
Submitter SNP IDWGSA-200403-chr11.chr11.NT_009237.16_27633741
RefSNP(rs#)rs2959121
Submitted Batch IDWGSA-200403-chr11
Submitted DateMar 19, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPMar 19 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodWGSA-200403
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence positionAADD01114098.1 3099

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss20736315|allelePos=201|len=701|taxid=9606|alleles='A/G'|mol=Genomic
 AGGAAAAAAA AGAATGGGGA TAGGAAGTGG GGAAAGATGC TGAGGTGATA GTGGGGCCAG
 ATTGTAGGAG GCTTTATATA TCAGTTTGAG AGGTATTGGG CAAAATGAGA CCACAGAAAA
 TTTTCATTGT GGGAGATTGG TATACTTAAA ACAATGCCTT AGAAAAATTA TTCTGGCAGT
 TACCTGTCAA TTAAATAGAA
 R
 GTAGAGGAAA CAGAGATATT GGGGTACTTA GAGGAACCAG TAGAAGAAAG ACTGTTGTAG
 GAGAACCTAT ATCATGCTAT TTAGGAGAAA GGAAACTGTT ACTCATGGCC TAACAGTATT
 TTGTTGTTGT TGGCAGAACT AGCAAGTGTT TCCTTTATAG CTTTAAcctt cttttctttc
 tttttctttc tttctttctc tttctttctt tctttctctt ccttccttcc ttccttcctt
 ccttccttcc ttccttcctt ccttccttcc tttcttcctt cctttccttt cttcctttac
 tttccttcct ttctttcttt ctttctttct ttctttcttt ctttctttct ttctttcttt
 tctttctttc tcgctttctt tctttctttc tctctttctc tctttctttc tttctttctc
 tctttctctc tttctttcCt ttcttttttt gactgagtct cgctttgtca ccaggctgga
 gtgcagtggc acaatcttgg

  Submitted Frequency for ss20736315 back to top
There is no frequency submission for ss20736315.


  dbSNP summary of Genotypes for ss20736315 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-HCB
- EAST ASIA 		9090G=0.72222221
A=0.27777779G/G=0.51111114
A/G=0.42222223
A/A=0.06666667
Pr(chiSq=0.123,df=1)
=0.752		Genotype
Freq.
HapMap-JPT9090G=0.63333333
A=0.36666667A/G=0.51111114
G/G=0.37777779
A/A=0.11111111
Pr(chiSq=0.454,df=1)
=0.527		Genotype
Freq.

  Submitted individual genotype for ss20736315 back to top
There is no individual genotype data for ss20736315.

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