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Submitted SNP(ss) Details: ss21228849           
Submitter
HandleSSAHASNP
Submitter SNP IDWGSA-200403-chr15.chr15.NT_010274.15_11564182
RefSNP(rs#)rs4984484
Submitted Batch IDWGSA-200403-chr15
Submitted DateMar 19, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPMar 19 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWGSA-200403
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence positionAADD01146005.1 9417

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss21228849|allelePos=268|len=768|taxid=9606|alleles='T/C'|mol=Genomic
 TCTTTATAAT GTTTTTAAAG ATCGACGACA ATGATGTACT TTCCAGTGGC TTACGGTAAC
 ACAAGTTCAT CATTTATATT CCACATGGTA GTGACTCCAC AACTTTCTCT TTATATATAG
 TAAGGTATGG TAGAATTATT CTCTCTACAA AATTTTAATT CAGCTTATAA TCTGTTTATG
 GCAATTTGTT AACTACCAAT tgttatgggt tgaactgtgt tcccccaaaa ttcacatgtt
 gaatttctaa ccccccagtt atgagag
 Y
 ttatttggag ataggctctt ggcagaggta atcaatttaa aataagttca ccaacgtgga
 ccctaatcca atatgattgc tgttttctta aaaaggggaa atttagaaac agagatatgc
 atgcattgat gatataaaga gatgtaggga gaaagccacc atcttcaagt caaggacaga
 ggtctggaga ggatcccttc ctcacagcca tcagaaggaa ccagccctgt cgacacctta
 aatgttgact tatatcctcc agaactgcaa aacaataaat ttctgttgtt gaagccatcc
 aggctgtggt acttgcttat gtgagaaccc tagcatacca aCCAATTTTA GCCACTCAGT
 AACTTTAATA TCCCCTCAGA TCAATATTTC AAAAACATAT GAAACCAAAT TAAATGGCTT
 AAAATTATGT TTAAAGTGTC CTATGTAATG GGGAGGCAAA AGGAACTAAT ACGTATTGTG
 CATCTATCAT ATCCTGGGCA

  Submitted Frequency for ss21228849 back to top
There is no frequency submission for ss21228849.


  dbSNP summary of Genotypes for ss21228849 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU110110T=0.56363636
C=0.43636364C/T=0.43636364
T/T=0.34545454
C/C=0.21818182
Pr(chiSq=0.701,df=1)
=0.403
Genotype
Freq.
HapMap-HCB
EAST ASIA
8888T=0.56818181
C=0.43181819C/T=0.45454547
T/T=0.34090909
C/C=0.20454545
Pr(chiSq=0.239,df=1)
=0.655
Genotype
Freq.
HapMap-JPT9090T=0.68888891
C=0.31111112C/T=0.48888889
T/T=0.44444445
C/C=0.06666667
Pr(chiSq=0.889,df=1)
=0.371
Genotype
Freq.
HapMap-YRI114114T=0.55263156
C=0.44736841C/T=0.57894737
T/T=0.26315790
C/C=0.15789473
Pr(chiSq=1.664,df=1)
=0.200
Genotype
Freq.

  Submitted individual genotype for ss21228849 back to top
There is no individual genotype data for ss21228849.

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