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Submitted SNP(ss) Details: ss21300553           
Submitter
HandleSSAHASNP
Submitter SNP IDWGSA-200403-chr16.chr16.NT_010505.14_3354228
RefSNP(rs#)rs12917626
Submitted Batch IDWGSA-200403-chr16
Submitted DateMar 19, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPMar 19 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWGSA-200403
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence positionAADD01148529.1 2487

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss21300553|allelePos=364|len=764|taxid=9606|alleles='A/G'|mol=Genomic
 TTTTAGCAGA AAGAGTCAGA TTAAAAGAAC TGGCCTGATA TCTGGATTTC CTCTAAAAAT
 CACCTTCCAA GAATTGGCCT GGATGCAGGC CTTTTTGGTT CCACCATCTA CACCTGGTAT
 TGGAGGGGCG GAGTTGAGGA CACTGTTCAT CCTACACTAA TGTTTGCTTA GTCTAAAGTT
 TCTGTTTTTG TTTTCTTTGG GTTAGCATTT AAAATGAGGA TTTTTTAAAA AGCCATATTT
 CTGGTATTCC TTGGAAAAGC TGAAGCTCTT TCCATAAATG TCCACAGAAT GTGGTAACGT
 CACCTGCAGA CATACAGTCA CAGCCTCCTT TAGATAGGGT CATAGGCGCT CCAGTTCACC
 ATA
 R
 TGTCTCTGCA GCCAAATTCA TTCATTTCTG TGACCTGCTT GGCCACGGAA AGTGTTTGAG
 TTTTTGACTA CTATTCTGTG AATTTCAAGG CCTGAAAACT GGGAATGTTG CTTAATGATC
 AGTCCTTTCT GACTCAGTCA TCTTGTCAAC TTAAAAAGAA AGGGTGCTGT CAAAACTTAA
 ATTTTCAGAG CTGAAAATGC TGTTAAGGAA CCACTTTCCA TCCCAAGTCC AAATCTATGT
 TGTATTCATG GAGAAACTGA AGCCCAAAAA GAAGACACTT AGCCATGGGT ACAAATGGAG
 TTGGTGACAT CACTGTCACT CATCAGGGAG TTGTCCATAC ACAGAAATCC CATAGTAACC
 ATTACACTGA ATTGAATCTA AAGCAACTTA AGAACAGATT

  Submitted Frequency for ss21300553 back to top
There is no frequency submission for ss21300553.


  dbSNP summary of Genotypes for ss21300553 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU224224G=0.75892860
A=0.24107143G/G=0.57142860
A/G=0.37500000
A/A=0.05357143
Pr(chiSq=0.069,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686G=0.72093022
A=0.27906978G/G=0.53488374
A/G=0.37209302
A/A=0.09302326
Pr(chiSq=0.244,df=1)
=0.655
Genotype
Freq.
HapMap-JPT172172G=0.77325583
A=0.22674419G/G=0.62790698
A/G=0.29069766
A/A=0.08139535
Pr(chiSq=2.515,df=1)
=0.150
Genotype
Freq.
HapMap-YRI226226G=0.98672569
A=0.01327434G/G=0.97345132
A/G=0.02654867
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HAPMAP-ASW9898G=0.89795917
A=0.10204082G/G=0.81632656
A/G=0.16326530
A/A=0.02040816
Pr(chiSq=0.583,df=1)
=0.479
Genotype
Freq.
HAPMAP-CHB8282G=0.71951222
A=0.28048781G/G=0.51219511
A/G=0.41463414
A/A=0.07317073
Pr(chiSq=0.030,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHD170170G=0.75294119
A=0.24705882G/G=0.54117650
A/G=0.42352942
A/A=0.03529412
Pr(chiSq=1.628,df=1)
=0.251
Genotype
Freq.
HAPMAP-GIH176176G=0.91477275
A=0.08522727G/G=0.82954544
A/G=0.17045455
Pr(chiSq=0.125,df=1)
=0.752
Genotype
Freq.
HAPMAP-LWK180180G=0.94999999
A=0.05000000G/G=0.89999998
A/G=0.10000000
Pr(chiSq=0.024,df=1)
=1.000
Genotype
Freq.
HAPMAP-MEX9898G=0.73469388
A=0.26530612G/G=0.59183675
A/G=0.28571430
A/A=0.12244898
Pr(chiSq=3.496,df=1)
=0.100
Genotype
Freq.
HAPMAP-MKK286286G=0.95454544
A=0.04545455G/G=0.90909094
A/G=0.09090909
Pr(chiSq=0.029,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI176176G=0.70454544
A=0.29545453G/G=0.52272725
A/G=0.36363637
A/A=0.11363637
Pr(chiSq=1.409,df=1)
=0.251
Genotype
Freq.

  Submitted individual genotype for ss21300553 back to top
There is no individual genotype data for ss21300553.

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