NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss21300557           
Submitter
HandleSSAHASNP
Submitter SNP IDWGSA-200403-chr16.chr16.NT_024812.10_2370608
RefSNP(rs#)rs1870293
Submitted Batch IDWGSA-200403-chr16
Submitted DateMar 19, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPMar 19 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWGSA-200403
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence positionAADD01062891.1 1280

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss21300557|allelePos=201|len=701|taxid=9606|alleles='T/C'|mol=Genomic
 GGTGAGGTAA AGACTCTTTA GCTGCTATAC CTATCACTGT ATATTCGTAG ACAGTGCATC
 ATAGCACACA AGAGTGGGAT CTCCCAGTTC CTTGACAGTC AAGGGGAGTG ACAAGGCCAC
 TGCCTACCTG GGTAGCACTA TTCCCCGCCT CTCATTTGGC GATGTCATTT CCCTCTTGTT
 TCCTTCGAGG ACTCCTATTC
 Y
 CCACCCTAGA CAAGATATTC TTCAGGCCTT GAACTGGGCC TGGAAcactg gtggttcttc
 atttccttct ctgattcttt attcttcctt tctaaataaa ttgtttgtgg ggtcccttca
 ttcttcttct tctttttttt ttttttactt tgtacacttc acttggacaa tctctttcac
 acccacagct tcaactatta cctaaatgtt gatgacttcc aagtatctgt ttccagccaa
 catctctAGG CTTGTATGCC TGGTAGGGGG ACAGTTTCAT TTGGAGGCCA CACATGTTTC
 AGATTTAAGG GATTTAAAAC AAATTATCTA CCTCCTTAAC CTACCTTTTT CATTTTCCCT
 CTACTCATAT GTGGCAGTAC CATCGACTCA GCTGTACAGC CTGGCAGCCT GTGATTCTCT
 CCTTTTCTCT CTCAGTTGGT CACCGAATCC TCCTGGCTCT TTTCTTTTTT ATTCTTCATC
 TTTCTATTCT CATTGCCACT

  Submitted Frequency for ss21300557 back to top
There is no frequency submission for ss21300557.


  dbSNP summary of Genotypes for ss21300557 back to top
No sufficient data to compute Hardy-weinberg probability for ss21300557.


  Submitted individual genotype for ss21300557 back to top
There is no individual genotype data for ss21300557.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement