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Submitted SNP(ss) Details: ss21372525           
Submitter
HandleSSAHASNP
Submitter SNP IDWGSA-200403-chr17.chr17.NT_010799.14_6478086
RefSNP(rs#)rs12935847
Submitted Batch IDWGSA-200403-chr17
Submitted DateMar 19, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPMar 19 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWGSA-200403
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence positionAADD01153290.1 56892

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss21372525|allelePos=501|len=728|taxid=9606|alleles='C/A'|mol=Genomic
 CTCCCCAGCA TCATATCCTG CCACGCCCAT TCTCCCAGTA GCCTTTTGCA TCTTCATACT
 GTCTACTCCT TTCTGCAGAT TTTCACATGT TCAGCCTTGG CCCATCCTTT TCCCAGCCTT
 GGCTTCATTA GATCCCACTC ACTCtttagc tctcagctca aatattcttt ctcagagaaa
 acttctatga ccccctGAGA CTGGATCAGG CCCACCTGTG CCCTCTCTCT CCCAGCACTC
 TGCCTTGCTC CTTCTGGCAC TGGCCCGGGT TATTTTAGGG GTTTGTTCAT TTGATTCTTA
 GGTTTCTCCC TGGCATGCAA GCTCTGCAGG GGCAAAGAGC ACTCTATTTT ATCTTATCTT
 GGTTTTaggg ccaggacttg gggaaggcag gcaagttgcc taaggagcat catttgagga
 gaccttcact cccagacatg ggccctgagc ttgcagtagc ccgagagtag gtcctcctta
 agtcttgttc ccgcagcagc
 M
 cagtggccta ctcttgtccc acccctgCGA GGCTCTCCAA CTTAAGACCA ACACAAGGAA
 GGTACACGCC ATAGGTACTT GTTGAGTGCA TACATTGGAG GCAGGAAGAT TAAGAAAAGG
 AGCTAGTCAG GAGGCTGCAC CCAAAGAGGA GGGGAGAGTG GAAGAGGTTA GACCATGCAG
 GGATGGCGAG GAGGCTGGAG GGAGCAGTGC AGAGAGACTC CAGTAGG

  Submitted Frequency for ss21372525 back to top
There is no frequency submission for ss21372525.


  dbSNP summary of Genotypes for ss21372525 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120C=0.56666666
A=0.43333334A/C=0.50000000
C/C=0.31666666
A/A=0.18333334
Pr(chiSq=0.020,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090C=0.86666667
A=0.13333334C/C=0.80000001
A/C=0.13333334
A/A=0.06666667
Pr(chiSq=8.055,df=1)
=0.005
Genotype
Freq.
HapMap-JPT9090C=0.88888890
A=0.11111111C/C=0.77777779
A/C=0.22222222
Pr(chiSq=0.148,df=1)
=0.752
Genotype
Freq.
HapMap-YRI120120C=0.94999999
A=0.05000000C/C=0.89999998
A/C=0.10000000
Pr(chiSq=0.016,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss21372525 back to top
There is no individual genotype data for ss21372525.

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