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Submitted SNP(ss) Details: ss21372527           
Submitter
HandleSSAHASNP
Submitter SNP IDWGSA-200403-chr17.chr17.NT_010718.14_11606652
RefSNP(rs#)rs7209206
Submitted Batch IDWGSA-200403-chr17
Submitted DateMar 19, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPMar 19 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWGSA-200403
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence positionAADD01152184.1 19600

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss21372527|allelePos=501|len=740|taxid=9606|alleles='A/G'|mol=Genomic
 tttgccatgt tggccaggct ggtcttgaac tcctggcccc aaatgatcca ctcgcctcag
 cttcccaaag tgctgggatt acagtagtaa gccactgtgg ctggccttcc tcttccacta
 ttaaggaccc atgggtgaca ctggacccac ctggatcatc tgcagactct gcttatctca
 gtgtctatct gaaccatctt caaagtctcc tttgccatgt aaggtaacat attcagggtg
 ctgggaatta ggatgtggac ttttgggagg cggggcatta ttttgtctac tacaGTCAGT
 GAGATTCAAC TCTGGGACCT TGGCTGGGTC CCTTGGGATT CCTGAGCAGA TGGGCTTTCA
 ACCTGAAGCT GCTGTCAGCC ACCTTGGATC TGTGAGGGGA GAGTCTGCCA AAGAATGGAG
 TCAACCTTAA GAAAAACAGA CCTGAGAGAC ACGGGGAGCA AGACCATGTC TCAGTGTTGT
 CCTTAGGGCC ACTAAGGCCA
 R
 CTCTACCCTT GCACGTTTTA GTCATTGAGT CAATCAATTG ACTGCCACCA TCATTACATG
 TGTCCTCCTC CTGAGTTGGT AACGCAGGCA CAACATAAAT GAATTCCTCC TTCATTGTCC
 TTTGGAGCAT AGGGGGCAGC CTTTTATCAA AAACATCTGC ATTGATGACC CACAGACAGA
 GTGTCATGGT GGCACATTGT TCCAGTACTG GAAATTCTGC TTCTTTCTTT CCCAGGGAT

  Submitted Frequency for ss21372527 back to top
There is no frequency submission for ss21372527.


  dbSNP summary of Genotypes for ss21372527 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120A=0.74166667
G=0.25833333A/A=0.55000001
A/G=0.38333333
G/G=0.06666667
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090A=0.95555556
G=0.04444445A/A=0.91111112
A/G=0.08888889
Pr(chiSq=0.008,df=1)
=1.000
Genotype
Freq.
HapMap-JPT9090A=0.96666664
G=0.03333334A/A=0.93333334
A/G=0.06666667
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.
HapMap-YRI120120A=0.92500001
G=0.07500000A/A=0.85000002
A/G=0.15000001
Pr(chiSq=0.057,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss21372527 back to top
There is no individual genotype data for ss21372527.

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