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Submitted SNP(ss) Details: ss21557898           
Submitter
HandleSSAHASNP
Submitter SNP IDWGSA-200403-chr2.chr2.NT_022171.13_2862874
RefSNP(rs#)rs7583067
Submitted Batch IDWGSA-200403-chr2
Submitted DateMar 20, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPMar 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWGSA-200403
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence positionAADD01020599.1 1894

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss21557898|allelePos=501|len=701|taxid=9606|alleles='C/T'|mol=Genomic
 TTATTTCCTG AATAAAAGAA AGGACTCTAA GGGGCAGAAG GGTGAAGTTG GCTGGCTAGT
 TCCCTTGTCT GGGGAGGCTA GCCTGTGTGG ACCACACTGA CAGACGTCCC TGCCCTCTGC
 CTTCTGGTTA GAGGGTGGGG AGAGAGTGAG GTGGAGGGAT TGATTCTGCC AGCTCCCTGC
 ATACGGATGG TCTGGGGCTG GTTGCCTCCC TCCAAGAAGG CCATGGCATC CATCAGGCAG
 CCCTCCTCAC TCCAGGCTCC AGTCCTATCT CAGGGTGGTA ATGGCTGTTT CTAATGCTTC
 tgttgatttc cctaaactct gcctgtacct ttgtaaatag ctcctttatt aaatcatcca
 actacccagt ttgtggtgct ctctgtgtcc agccaggacc ctgagtgata caTGGATGAA
 TGGTTTCAAC CCCCATTAAT AATTTTCAGT TCCCACATGG CAATGCTTGG GCCCAAGATA
 AGGTAGTTGG GGGTCAGAGC
 Y
 ACAGATGCCC TTGACCCCCC TGTATGTCTC CTTTCCTTCC AATCAGACAA AGATTCGCAG
 AATCCCAGGA ATACCTCCCC ACCTGCACCA TCTTCTACCT CCCATCCGAC CTGGGGCTTC
 TTGTGGTCTT CACTTTCCTC AGTTTCCCTC AACAACGGTG TCCTTCCCTG AGATCCGCCG
 CACCTAGCTA TTATACTGTC

  Submitted Frequency for ss21557898 back to top
There is no frequency submission for ss21557898.


  dbSNP summary of Genotypes for ss21557898 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU118118C=0.73728812
T=0.26271185C/C=0.49152541
C/T=0.49152541
T/T=0.01694915
Pr(chiSq=4.263,df=1)
=0.050
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090T=0.57777780
C=0.42222223C/T=0.44444445
T/T=0.35555556
C/C=0.20000000
Pr(chiSq=0.357,df=1)
=0.584
Genotype
Freq.
HapMap-JPT9090C=0.62222224
T=0.37777779C/C=0.42222223
C/T=0.40000001
T/T=0.17777778
Pr(chiSq=1.001,df=1)
=0.317
Genotype
Freq.
HapMap-YRI120120C=0.80833334
T=0.19166666C/C=0.64999998
C/T=0.31666666
T/T=0.03333334
Pr(chiSq=0.029,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss21557898 back to top
There is no individual genotype data for ss21557898.

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