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Submitted SNP(ss) Details: ss217390872           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_3_CHB_17_chr1_17801259
RefSNP(rs#)rs116646138
Submitted Batch IDpilot_3_CHB_mar_2010
Submitted DateApr 09, 2010
Publication Cited[1] SNP discovery in 1000 Genomes Project Pilot 3: targeted enrichment and exon sequencing for 1000 human genes.
First entry to dbSNPApr 9 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodEXON_CAPTURE_SEQUENCING
Ascertainment Samplesize218
PopulationN.D.
Allele
Observed AlleleG/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:1778

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss217390872|allelePos=201|len=401|taxid=9606|alleles='G/C'|mol=Genomic
 TGTCTGAGGC CAACTCCACC TCAGGTCTCC CCAGCAGCCT GGCCCTCAGC CCACTTTTGC
 CCATCATGTC CCGCTGACCA GGTGAGGGGC TGCCAGAGGC TTCTGGGAGC CACCTCTGGA
 CACCTCTGCA GTGCCATCTC TTGCCCGCAG GGTGCCAGCC TGGGTGAGCA ATGGGGATGC
 AGCGGACGCA GCCTTCTCCG
 S
 GGCCCGGCAC TCCAGCTGGA AGCGGAAGAG TTCCCGTCGC AGTAAGTCTC CCCTCCGGCC
 CACCGCCCAC CCCAGGTAGC AAGCTCCAGG ATATTCTAGT CTTTCTAACC CAAGAGAGCT
 GATGTGGGCT CCTGTGAGCC CAGGGTTCAT CCTCACCGGG GGCTTCTGTG GCCCTGGAGG
 ACCAACCACC GCCCCCAAGA

  Submitted Frequency for ss217390872 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_3_CHB_exon_capture_panel
EAST ASIA
174G=0.98850602
C=0.01149400
pilot_3_CHB_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss217390872 back to top
No sufficient data to compute Hardy-weinberg probability for ss217390872.


  Submitted individual genotype for ss217390872 back to top
There is no individual genotype data for ss217390872.