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Submitted SNP(ss) Details: ss217392077           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_3_CHD_8_chr1_3541652
RefSNP(rs#)rs2296034
Submitted Batch IDpilot_3_CHD_mar_2010
Submitted DateApr 09, 2010
Publication CitedN.D.
First entry to dbSNPApr 9 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodEXON_CAPTURE_SEQUENCING
Ascertainment Samplesize214
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:6878

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss217392077|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 CCAAACTCCG TGATCATTTT CCAAGTCACG TGATTAAGGA TGCGCACCTG AGGAAGGAAA
 CCATGCACAG GTGAGGCAGG GCCCGGCCCG CTGGGCGGTC GGACTTCCTG AGTGCCCTGC
 ACTGGTTCCC ACCTTTCCAT CATAGCTCCC AACTGCCAGG AACTGACTGC TGGGGCTCCA
 GGCCACAGAC TTGATGCCCA
 R
 GGACCACTCG TAAGCGCTGT ACGTGGACAA CAACCGGCCA TCCAATGAGT ACAGCAGAAT
 CTTGTACTGC AGATGAGACA TTTCAGTTAA TAATGAATAC ACCCCCGTCG CCAGGAACAC
 ACCACAGACG CGGGTGCTGC AGAGTGACAT TGGTGCAGAT AGCACAAAGC TGGCAGGACT
 GTCCGCGTGG CCGTGGAAAA

  Submitted Frequency for ss217392077 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_3_CHD_exon_capture_panel
NORTH AMERICA
212G=0.75471699
A=0.24528299
pilot_3_CHD_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss217392077 back to top
No sufficient data to compute Hardy-weinberg probability for ss217392077.


  Submitted individual genotype for ss217392077 back to top
There is no individual genotype data for ss217392077.