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Submitted SNP(ss) Details: ss217392163           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_3_CHD_26_chr1_18025485
RefSNP(rs#)rs115420942
Submitted Batch IDpilot_3_CHD_mar_2010
Submitted DateApr 09, 2010
Publication CitedN.D.
First entry to dbSNPApr 9 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodEXON_CAPTURE_SEQUENCING
Ascertainment Samplesize214
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:4872

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss217392163|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 CGCAGGTGTT CGAGCAGCCG GGGCCCAGCA TCCCACGGGC CATTGTGGAA TCCGTGGAGT
 CCTGCGAGAT CTCCCTGCGC CCCCTGCTGG TCTCCCACGT GATGGCCTGC GGGGGCAACA
 CCCTCTATCC CGGGTTCACA AAGCGCCTGT TCAGGGAGCT GATGGGGGAT CACGTCTCCT
 CCACCAAGGC CACAGTCTGG
 R
 AGGGTTCCAA TAGAAACTTT AGTGTCTGGC TAGGAGCGTC CGTGGTGGCT CACCTTTCTA
 CCTACCAGTC TGAGTGGATG TCCCGAGAGG AGTATGGTGA GCATATGAGG ATGTGACCCT
 ACTGGCTCAC TCCTGAGAAT GGGCTCCTGT TAGATGGGCA CGGGCGGATT AATTTTAGCA
 AAATGTTCTG GGTGGGGGTA

  Submitted Frequency for ss217392163 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_3_CHD_exon_capture_panel
NORTH AMERICA
214G=0.99532700
A=0.00467300
pilot_3_CHD_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss217392163 back to top
No sufficient data to compute Hardy-weinberg probability for ss217392163.


  Submitted individual genotype for ss217392163 back to top
There is no individual genotype data for ss217392163.