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Submitted SNP(ss) Details: ss217400002           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_3_JPT_11_chr1_17831450
RefSNP(rs#)rs114520727
Submitted Batch IDpilot_3_JPT_mar_2010
Submitted DateApr 09, 2010
Publication CitedN.D.
First entry to dbSNPApr 9 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodEXON_CAPTURE_SEQUENCING
Ascertainment Samplesize210
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:4828

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss217400002|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 CTTGTCACCC AGGGATGGAG GGAGTGGCTT CATCTCCTCC ACCTCTCCCA GCCTCAGTCT
 CCCTTTCTGC ACCATGGGAG GATTCTGGGT CTCCGGCGCG GTAAAGCCGC CGGGCCGCGA
 TGCTGATGCT GACCTTCCCT GCCCCTCCTC CAGCTGTTGA CCTCAGGCCA GCGGCAGCTG
 CTCCTGTGTG AGACGTTGAC
 R
 GAGACCGTGT ACGGTGACCG CGGGCAGCTA ATTAAGTCCA AGGAGCGTCG GGTCTTCCTG
 CTCAACGACA TGCTTGTCTG TGCCAACATC AACTTCAAGT AAGTGGGCCT GGGTTGGAGG
 GGGCAATCAC CCCTCCCTGG AGACCCCATC CCGCCCTACT CCAGTCTCTT GGCCGGCCGC
 ACTACAGTGG GACCCCATGT

  Submitted Frequency for ss217400002 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_3_JPT_exon_capture_panel
EAST ASIA
180G=0.97777802
A=0.02222200
pilot_3_JPT_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss217400002 back to top
No sufficient data to compute Hardy-weinberg probability for ss217400002.


  Submitted individual genotype for ss217400002 back to top
There is no individual genotype data for ss217400002.