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Submitted SNP(ss) Details: ss217405761           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_3_LWK_8_chr1_1110357
RefSNP(rs#)rs74046642
Submitted Batch IDpilot_3_LWK_mar_2010
Submitted DateApr 09, 2010
Publication CitedN.D.
First entry to dbSNPApr 9 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodEXON_CAPTURE_SEQUENCING
Ascertainment Samplesize216
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:1846

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss217405761|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 GGACAGGCCC TCCGGACAGT CTGGGAGCCA GTCTCCAGGC ACCGTGTGCC CCCAGTTCAT
 GCAGAAGAAG AGCCCTCTGT ACATGCTGCT GAAGGAGCAC ACGGTGTGGA GCATGGAACA
 CCTCAACCGC TACATCAGTG ACACGTTCTG GAAGGCCCGG GGCCTCGCCA AGGACTGGGT
 CTTCACCACC CTCAAGGTGC
 R
 TCCACTGTGC CCTCCAGTCT GGGAGTGAGA TCCCTCGGGG CGGGGGTGTG TGGTCAGGCT
 GGGCACCAGG CACACAGATG TCCGTGGCGT GCGTGGGCGG CTGCGCTGAA GTGTGACCTG
 ACCGTGTGGA ACCAAACCCT TCCAGCGTCT CTGCTCACTT AGCTGGCAGT GCCTGTCCCC
 AGCAGCCAGC AAAGGCCCGG

  Submitted Frequency for ss217405761 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_3_LWK_exon_capture_panel
WEST AFRICA
216G=0.99536997
A=0.00463000
pilot_3_LWK_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss217405761 back to top
No sufficient data to compute Hardy-weinberg probability for ss217405761.


  Submitted individual genotype for ss217405761 back to top
There is no individual genotype data for ss217405761.