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Submitted SNP(ss) Details: ss217405802           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_3_LWK_15_chr1_3538058
RefSNP(rs#)rs16823940
Submitted Batch IDpilot_3_LWK_mar_2010
Submitted DateApr 09, 2010
Publication CitedN.D.
First entry to dbSNPApr 9 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodEXON_CAPTURE_SEQUENCING
Ascertainment Samplesize216
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:1476

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss217405802|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 TGCCACGTCC GTGGCCTCGG GGATGTGCTT ACCTTCCCCA GGCACCTGCA CCGACATGCA
 GCCCGCTGGG GACCACAGGT AGAGCCTGCT GCCTCCCGTG CAGATGGCCA GCCGCGGCTG
 CTGCGGGTCC CACTGAAATG CGCGCACTGG GGACAGCTGC TCGAGCACCG CGAACAGCCT
 CAGCTTCTGA ATGTCCCAGA
 Y
 CCAGACGGCA TTGGGAATGT TGTCTGAGGA AGGAAGGACA GGGCACCGGT GTCATCCCTG
 CCTGGCTCCT CTGTGTTGGC CCTGCCCCTC TGCTCTGCTG TTGACACCAC AGGAGGGGAG
 GGGAAGAACC GGTGGGGTGG GGCGGCTGCA CCCTGCAGTC TGGGTTCAGT TGGGCCCTGT
 AGGGCTCCTG GCCAGGGCCA

  Submitted Frequency for ss217405802 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_3_LWK_exon_capture_panel
WEST AFRICA
210C=0.89523798
T=0.10476200
pilot_3_LWK_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss217405802 back to top
No sufficient data to compute Hardy-weinberg probability for ss217405802.


  Submitted individual genotype for ss217405802 back to top
There is no individual genotype data for ss217405802.