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Submitted SNP(ss) Details: ss217405838           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_3_LWK_21_chr1_6447236
RefSNP(rs#)rs35137293
Submitted Batch IDpilot_3_LWK_mar_2010
Submitted DateApr 09, 2010
Publication CitedN.D.
First entry to dbSNPApr 9 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodEXON_CAPTURE_SEQUENCING
Ascertainment Samplesize216
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:2327

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss217405838|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 GCAGCCATCG CCATGTTCAT AGAAGCCAGG CAGGCAGGTC CCACAGTCAG TATCTCTGCG
 GGAACCTGCA ATCCAGGAGA GGCATGCGTC ACCATGGGAC AGGAGTGGGT CAGGCAGGGA
 GAAGGGGGTC TGGGAGTAGA GAGCCCTGGG TGGGGGTACT CACAGAGTAG CCGTGTGTGG
 CGGTGCAGGG CCCCGCAGTC
 Y
 AGGCATGGTT GGCAGTAGAA GGGTGAACTG CTGACACATT GGCTGACCTG GCACTCCACA
 AACCAGCCTG GCTTACAGCC ACAGCGGGTG TCGGCCACTG CTGAACAGTT CTCCAGCGCC
 ACCTGGGAGG CTGGTGGGGG TGCAGGGAGA TGGGGAGTGG AGAGTTAGTC AGGGCCAAAG
 GCTCCCATGG AGAGGCAGAG

  Submitted Frequency for ss217405838 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_3_LWK_exon_capture_panel
WEST AFRICA
216T=0.94907397
C=0.05092600
pilot_3_LWK_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss217405838 back to top
No sufficient data to compute Hardy-weinberg probability for ss217405838.


  Submitted individual genotype for ss217405838 back to top
There is no individual genotype data for ss217405838.