NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss217405862           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_3_LWK_25_chr1_11632479
RefSNP(rs#)rs114834790
Submitted Batch IDpilot_3_LWK_mar_2010
Submitted DateApr 09, 2010
Publication CitedN.D.
First entry to dbSNPApr 9 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodEXON_CAPTURE_SEQUENCING
Ascertainment Samplesize216
PopulationN.D.
Allele
Observed AlleleC/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:1498

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss217405862|allelePos=201|len=401|taxid=9606|alleles='C/A'|mol=Genomic
 TCAACCTTTG CAGACCCGTG GCCCACGTGG CCTCAACCCC TGCAGTGGGG AGGCAGCACC
 CCCAGGCGGG GGGTTCCCCA GCTGGCTCTC CCCTCTGCCT TACCCCGCTC CTCCCAGCCC
 CATGCCACCC CAGGACCCTC TCACCAGTCC TTCACCACGA TGGCCGGCTG AGTCGTGTCC
 AGCAGCTCCT CCCAGTAGCC
 M
 TCAGCCTGCA GGTCAATGAC CTGTGCTTTG CGACACCACC TGGGAGAACT GGAGTTAGGA
 CAGAGCGAAC GCTCCCCCCT TCCCACCTCC TCCACCCCCT TCTCCTTACT CAAAGGAGGA
 GGCGAAGTAC TTCTTGACGC TCTCATCGTG GGTGAACTCC ACCCCACTGT CTCCAGGCAG
 CTCCTCCACC CTCCAGCCGT

  Submitted Frequency for ss217405862 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_3_LWK_exon_capture_panel
WEST AFRICA
216C=0.98611099
A=0.01388900
pilot_3_LWK_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss217405862 back to top
No sufficient data to compute Hardy-weinberg probability for ss217405862.


  Submitted individual genotype for ss217405862 back to top
There is no individual genotype data for ss217405862.