NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss217410475           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_3_TSI_9_chr1_3541599
RefSNP(rs#)rs115982402
Submitted Batch IDpilot_3_TSI_mar_2010
Submitted DateApr 09, 2010
Publication CitedN.D.
First entry to dbSNPApr 9 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodEXON_CAPTURE_SEQUENCING
Ascertainment Samplesize132
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:4407

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss217410475|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 GAAACACGTG TTCCAGACTT ACTATCTTGG GATCATTAAT GGCTGCAGGA TGCCCAAACT
 CCGTGATCAT TTTCCAAGTC ACGTGATTAA GGATGCGCAC CTGAGGAAGG AAACCATGCA
 CAGGTGAGGC AGGGCCCGGC CCGCTGGGCG GTCGGACTTC CTGAGTGCCC TGCACTGGTT
 CCCACCTTTC CATCATAGCT
 Y
 CCAACTGCCA GGAACTGACT GCTGGGGCTC CAGGCCACAG ACTTGATGCC CAGGGACCAC
 TCGTAAGCGC TGTACGTGGA CAACAACCGG CCATCCAATG AGTACAGCAG AATCTTGTAC
 TGCAGATGAG ACATTTCAGT TAATAATGAA TACACCCCCG TCGCCAGGAA CACACCACAG
 ACGCGGGTGC TGCAGAGTGA

  Submitted Frequency for ss217410475 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_3_TSI_exon_capture_panel
EUROPE
132C=0.99242401
T=0.00757600
pilot_3_TSI_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss217410475 back to top
No sufficient data to compute Hardy-weinberg probability for ss217410475.


  Submitted individual genotype for ss217410475 back to top
There is no individual genotype data for ss217410475.