Submitted SNP(ss) Details: ss217410475

Submitted SNP(ss) Details: ss217410475

Submitter
Handle	1000GENOMES
Submitter SNP ID	pilot_3_TSI_9_chr1_3541599
RefSNP(rs#)	rs115982402
Submitted Batch ID	pilot_3_TSI_mar_2010
Submitted Date	Apr 09, 2010
Publication Cited	N.D.
First entry to dbSNP	Apr 9 2010 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	EXON_CAPTURE_SEQUENCING
Ascertainment Samplesize	132
Population	N.D.

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
depth.cov:4407

Fasta sequence (Legend)

 GAAACACGTG TTCCAGACTT ACTATCTTGG GATCATTAAT GGCTGCAGGA TGCCCAAACT
 CCGTGATCAT TTTCCAAGTC ACGTGATTAA GGATGCGCAC CTGAGGAAGG AAACCATGCA
 CAGGTGAGGC AGGGCCCGGC CCGCTGGGCG GTCGGACTTC CTGAGTGCCC TGCACTGGTT
 CCCACCTTTC CATCATAGCT
 Y
 CCAACTGCCA GGAACTGACT GCTGGGGCTC CAGGCCACAG ACTTGATGCC CAGGGACCAC
 TCGTAAGCGC TGTACGTGGA CAACAACCGG CCATCCAATG AGTACAGCAG AATCTTGTAC
 TGCAGATGAG ACATTTCAGT TAATAATGAA TACACCCCCG TCGCCAGGAA CACACCACAG
 ACGCGGGTGC TGCAGAGTGA

Submitted Frequency for ss217410475

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
pilot_3_TSI_exon_capture_panel - EUROPE	132	C=0.99242401	T=0.00757600				pilot_3_TSI_mar_2010	1000GENOMES

dbSNP summary of Genotypes for ss217410475

No sufficient data to compute Hardy-weinberg probability for ss217410475.

Submitted individual genotype for ss217410475

There is no individual genotype data for ss217410475.

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