NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss217410547           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_3_TSI_23_chr1_17853771
RefSNP(rs#)rs35255680
Submitted Batch IDpilot_3_TSI_mar_2010
Submitted DateApr 09, 2010
Publication CitedN.D.
First entry to dbSNPApr 9 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodEXON_CAPTURE_SEQUENCING
Ascertainment Samplesize132
PopulationN.D.
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:5250

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss217410547|allelePos=201|len=401|taxid=9606|alleles='A/C'|mol=Genomic
 GGCACTCGTG AAGCATGTTG CTTTCCTGGC CCCCACCCAC AGGGATTCTA ATCCAGGGAG
 AGTTGGATGG GGCCCAGGAA TCTGCCAAAT ATTGGCATCT GGGCACCTTG ATGATTAACC
 TCACATGTAC CGTCTCTGTC TCTGCAGCTT GGGGCCCTGG TCCACAGTCC TGTCAACTGT
 CCCCTGCTGG GTTTCTCAGC
 M
 GTCAGCACCT CCCTTCCACA GGGCTACCTC TGGGTGAGTC ACCCCCCTGC CCAGCTGGGC
 ATTCTGGCCT CAGGACAGGA GTAGGGAGAG CGGCACCTGG GAGGGGGTGC TGGAGACAGC
 AGCTGCCTGC CTCATCTCAT GCAGCTTCAT CCACCAAGGT CTTCCTGGGC ACCTCTGGTG
 CCAGGCACTG CATTTGGAGT

  Submitted Frequency for ss217410547 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_3_TSI_exon_capture_panel
EUROPE
128A=0.89062500
C=0.10937500
pilot_3_TSI_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss217410547 back to top
No sufficient data to compute Hardy-weinberg probability for ss217410547.


  Submitted individual genotype for ss217410547 back to top
There is no individual genotype data for ss217410547.