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Submitted SNP(ss) Details: ss217410558           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_3_TSI_25_chr1_17863639
RefSNP(rs#)rs6695710
Submitted Batch IDpilot_3_TSI_mar_2010
Submitted DateApr 09, 2010
Publication CitedN.D.
First entry to dbSNPApr 9 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodEXON_CAPTURE_SEQUENCING
Ascertainment Samplesize132
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:1338

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss217410558|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 CCCTGCTGAG CCCCCTGCTG CTGGCCTGCG TTCCCAGGAG ACCTGCTTGC CGCTCCTGGC
 CCCTGACCTG CCTCCCCTCT CTCCCTGCAG GAGGTGTCCT GTGGGACCTG GAGAGCCCTC
 CCGTGTGCCT GACTGTGGGG CCCGGGCCTG TCCGCACCCT GTTGAGCCTG GAGGATGCCG
 TGTGGGCCAG CTGTGGGCCC
 Y
 GGGTCACTGT CCTGGAAGCC ACCACCCTGC AGCCTCAGGT ACTGCACTAT CCTTTGGCTT
 GTGGCCCTGG AGGCCTGCCT TCCTTTTGCT GACCCTTTCT TATGTCCACC CCGGCACCGC
 TTTCAGCTCC CAGTGGCATT CCAAGGATCG ATTGGGCAGA GTTTGTCCGG AAGCAGAGGG
 GGCCCAAGGT CCCTATTGGG

  Submitted Frequency for ss217410558 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_3_TSI_exon_capture_panel
EUROPE
124C=1.00000000
T=0.00000000
pilot_3_TSI_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss217410558 back to top
No sufficient data to compute Hardy-weinberg probability for ss217410558.


  Submitted individual genotype for ss217410558 back to top
There is no individual genotype data for ss217410558.