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Submitted SNP(ss) Details: ss217410578           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_3_TSI_29_chr1_18024983
RefSNP(rs#)rs116745746
Submitted Batch IDpilot_3_TSI_mar_2010
Submitted DateApr 09, 2010
Publication CitedN.D.
First entry to dbSNPApr 9 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodEXON_CAPTURE_SEQUENCING
Ascertainment Samplesize132
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:2678

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss217410578|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 GACTTCAGCT TTGACTGCTG AGCAGGCTGG GGGGAAATGC ACTGAGTGAA TTCTCCCTCG
 TTGCAGATCC TGTTTGAGTT GCTGCATGTC CCATCGGTCC TCCTGGCCGA CCAGCTGCAG
 ATGTCCCTGT ATGCCTCTGG CCTCCTGACC GGAGTGGTGG TTGATTCTGG CTATGGCCTG
 ACCCGCGTGC AGCCTTTCCA
 Y
 CAGGGCCGCC CCTTGCCCGC CAGCGGCAAG ACGCTGGAGT TCGCCGGCCA GGATCTCTCC
 GCCTATCTCC TCAAGAGTCT CTTTAAGGAA GATTGCGATA GACGCTGCCT GTTTCAGCTG
 GAGACAGTCG CCGTGACTCA GATGAACAAG TGCTACGTGC CGCAGAATCT GGGGGAGGCC
 CTGGACTTTC GTGAGAGGCA

  Submitted Frequency for ss217410578 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_3_TSI_exon_capture_panel
EUROPE
126C=0.99206299
T=0.00793700
pilot_3_TSI_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss217410578 back to top
No sufficient data to compute Hardy-weinberg probability for ss217410578.


  Submitted individual genotype for ss217410578 back to top
There is no individual genotype data for ss217410578.