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Submitted SNP(ss) Details: ss21837472           
Submitter
HandleSSAHASNP
Submitter SNP IDWGSA-200403-chr22.chr22.NT_011520.9_1873829
RefSNP(rs#)rs13053134
Submitted Batch IDWGSA-200403-chr22
Submitted DateMar 20, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPMar 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWGSA-200403
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence positionAADD01173531.1 2953

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss21837472|allelePos=501|len=1001|taxid=9606|alleles='A/T'|mol=Genomic
 tcttgttacc cacacgaaag gacctaaggt aatttctgac agcctgggac tccttgtgca
 aaacagaagg tgccacagac ctcattttag gagaaacctt tgttttcctc ttggaacccc
 aagaactgta agcagacagg tccatctcaa aatccaaggc tctgctctgt tttgctttgc
 tttacctgac tttttttttg atttgggtgg gcatcaaaaa ttagtagggg agagctaaag
 aaagttgtgg atatgaacat gtatttatgg taaggtaagt tatgaaggag agaaatctta
 ggatcttgta tggcaaattc ttgcactaaa gtagataatg actaattagg aaagcaggaa
 atataggaca agtcagaaag tcataagatg ggagagaaaa gcttacgcct ggtagatcct
 ctcctgtcta gaagtgtcgt atgtgtgatg tttatatgaa ggagctctaa ttaattggat
 taaaagataa tgaaagctct
 W
 aaattgtcag aaaaatagaa gctctaatgc cttttatttc acgtgacttc agcaatcttt
 gggaaatgag agttttaaaa ttattggtgg taaaaagtct tcaaaaagta gacatttggt
 ctaaattaag tcagaggtta aattggctaa gtgctttaat gtcataaact gcttctttga
 ctttggaaaa ttgttcagtt tacctaattt ggaactgtta gatttctagg taaggcctgg
 ggagaggtgg agttagccat gtctcctagc tatgctggaa gagttagact ttatctgcag
 ttctgtcatg tatcctggac tctgcacctg gtatgtaatt gaaactgctt acATTgaaaa
 gaaaaattat gtgtttttgg ttttaaaagg ggtgggaata tggttttttc caaaaagtga
 gttttggcaa atttagaaag tttaagaatt atttttagtt gtaggaaaat aaagtttaag
 caagttatag aaggtttatg

  Submitted Frequency for ss21837472 back to top
There is no frequency submission for ss21837472.


  dbSNP summary of Genotypes for ss21837472 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU114114A=0.92982459
T=0.07017544A/A=0.87719297
A/T=0.10526316
T/T=0.01754386
Pr(chiSq=2.132,df=1)
=0.150
Genotype
Freq.
HapMap-HCB
EAST ASIA
8282A=0.96341461
T=0.03658536A/A=0.92682928
A/T=0.07317073
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.
HapMap-JPT7474A=0.91891891
T=0.08108108A/A=0.89189190
T/T=0.05405406
A/T=0.05405406
Pr(chiSq=15.025,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss21837472 back to top
There is no individual genotype data for ss21837472.

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