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Submitted SNP(ss) Details: ss22036426           
Submitter
HandleSSAHASNP
Submitter SNP IDWGSA-200403-chr4.chr4.NT_016354.16_26330605
RefSNP(rs#)rs13101247
Submitted Batch IDWGSA-200403-chr4
Submitted DateMar 20, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPMar 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWGSA-200403
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence positionAADD01049004.1 7002

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss22036426|allelePos=501|len=1001|taxid=9606|alleles='G/T'|mol=Genomic
 TTAAATCTAT GGATGCAGAA CCCGCAGATA CAGAGAACCC ACTGTCTGTT ACTCTACTTG
 AAGCTGATCa tttatttttt gctgcttcat tttggatgac gcttatttct atttctccaa
 gttcactaat attttcctca gtaaagccta atctTTCCTT Gcagttgatc cttattattt
 gcagattctt tacttgtaaa ttcacctctt gctaaaatgc atttgtaacc cccaaatcaa
 tacttgctgt gcttttaaag tcgttcatgg tcattagtaa actagcaaaa aaattttgag
 ttattcccag ttgaggtcaa acaagacaac actctgcctt ctggtttcac ctctcataag
 gtaaataaat acctgttttt gtggtctact tattgccaca gttttacatt tttgtacttt
 ttatcttaat ttcactgttc aaaatgagcc ccaaactgtt caaaataggg ccaaagtgct
 gtttagtgtt cctaacacca
 K
 aaggctgtga tatgccttgt ggagaaaacg tatgtgttag acaagctttg ttcagcatga
 cttacagtgc cgttggccat gagttcaatg ttaatccatt aacaatgtat attaaatagg
 gtgtctttaa acagacacaa atataaaaca aaatcttata ttgattggtt gaggaaaatt
 ttgtgaccag aaactcacag gaatctaatc ctatgctatg atttaaaggt acatgggccc
 ccaaaatgta tatgttggaa cctaaggcca aatgtgatag tattaagaga cagaaccttc
 attaggtgat taggccatga gggttctacc ttcatgaatg agatgagtcc ctttatacaa
 gggatttaag gggcgagttc agcttctctg atccttctat ctcttctgcc atgtgaggac
 acagcattca aagtgccatt ttggaagcag agactagggc cttcaccaga cattgaaact
 taaccttgga attcccagcc

  Submitted Frequency for ss22036426 back to top
There is no frequency submission for ss22036426.


  dbSNP summary of Genotypes for ss22036426 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120G=0.89999998
T=0.10000000G/G=0.81666666
G/T=0.16666667
T/T=0.01666667
Pr(chiSq=0.329,df=1)
=0.584
Genotype
Freq.
HapMap-HCB
EAST ASIA
8888G=0.86363637
T=0.13636364G/G=0.72727275
G/T=0.27272728
Pr(chiSq=0.279,df=1)
=0.655
Genotype
Freq.
HapMap-JPT8686G=0.90697676
T=0.09302326G/G=0.81395346
G/T=0.18604651
Pr(chiSq=0.080,df=1)
=1.000
Genotype
Freq.
HapMap-YRI120120G=0.95833331
T=0.04166667G/G=0.91666669
G/T=0.08333334
Pr(chiSq=0.009,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss22036426 back to top
There is no individual genotype data for ss22036426.

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