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Submitted SNP(ss) Details: ss22036444           
Submitter
HandleSSAHASNP
Submitter SNP IDWGSA-200403-chr4.chr4.NT_006316.15_1665398
RefSNP(rs#)rs13101252
Submitted Batch IDWGSA-200403-chr4
Submitted DateMar 20, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPMar 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodWGSA-200403
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence positionAADD01043036.1 27833

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss22036444|allelePos=240|len=740|taxid=9606|alleles='A/C'|mol=Genomic
 ATCAGTTGTA AATTATTAAA AACAAAACTG CAGTCTTATC ACCTCCAGAT GTTTTTTCTT
 CTTTCTTGTG TTTGTTTTCT ATTTAACAGA CTGAAAAATT ATGTACAAGG AGGATGCCTT
 CATTTTAAGC TGGTAACATT GTTCTAGCAT TAATTGTTAC taattttatt taattttatt
 aaaaCACCCA GGGGGTGTTT GTAGCCAGGG TTCAGAAGAC AATCTATGGG GACTTCAGA
 M
 TGTCTTcaca aattttttga taatcccatt gtgacatggg atagaatctt agaaccttag
 aattcagctg gttttagtgg ctcactctta tccaatagaa cgcagcagag atgattggct
 tgatttctga agccagaaca tacaaggcaa taaagtatcc tctgtgttaa ccagaacact
 tactcctgga gtcctgagtt gccatgtaag cagctggatt gctttaacac tgccattatg
 taaggaagct caacctagtc catgtggtga gaccatatgg agAAGTCTCG ATATTGCATA
 GAGAAAGAAA GATGACAAGC CAATTGTCTC AATCTCTCAC TACTCCAATT CCATCTATTG
 TCtgactgca acctcacaaa tactttgaag ccaaaattat ccttcctaaa ttcctaaccc
 aaagaaaaag ttgaagacaa tacaatgtta attactgttt caagctactg acttgggggc
 tattttatta TTAAAATAGT

  Submitted Frequency for ss22036444 back to top
There is no frequency submission for ss22036444.


  dbSNP summary of Genotypes for ss22036444 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120A=0.80000001
C=0.20000000A/A=0.64999998
A/C=0.30000001
C/C=0.05000000
Pr(chiSq=0.234,df=1)
=0.655		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		9090C=0.60000002
A=0.40000001A/C=0.48888889
C/C=0.35555556
A/A=0.15555556
Pr(chiSq=0.015,df=1)
=1.000		Genotype
Freq.
HapMap-JPT9090C=0.64444447
A=0.35555556A/C=0.44444445
C/C=0.42222223
A/A=0.13333334
Pr(chiSq=0.041,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss22036444 back to top
There is no individual genotype data for ss22036444.

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