Submitted SNP(ss) Details: ss22367402

Submitted SNP(ss) Details: ss22367402

Submitter
Handle	SSAHASNP
Submitter SNP ID	WGSA-200403-chr6.chr6.NT_025741.13_55433022
RefSNP(rs#)	rs1738586
Submitted Batch ID	WGSA-200403-chr6
Submitted Date	Mar 21, 2004
Publication Cited	[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Mar 21 2004 12:00:00:000AM

Resource Links
GenBank Accession	NT_025741
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	WGSA-200403
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 12
Genotype Submission	N.D.
Haplotype	N.D.

Comment
sequence positionAADD01076273.1 9775

Fasta sequence (Legend)

 ATTAAAAAGT GAATGTAGGT ATTGGATTAA GAAGAGAAAC TTAAGTTCGT GGACCTCGTC
 TCCTCCCAGT CCTGTAACTT ACACACACAC ACACAAACAG ATTTCAAATA TCCATGCTAG
 CAAACTGGAA TCATTGCCAT GAAGTTTTAG ATAGTTCTGA AAAATAGGAA GATGGAATTA
 GATTGATGAT TAAAAGGACA
 R
 CCCAAAATAT GGTGGACTTC CATCCTTAAC AAGCATTCTT GCTTTTCATG TTCTTAgcct
 ctcctgctaa agtgggagct ttataaaagc agaggttatt ccccttttta tttgctgctg
 tgttccctat gttcagaaca gaactttgtt acatatagtc gtaagtgttc agtaaatatc
 tgttgaacaa atgagtAGAA TAAGTAAAAG ACAATTTATG GATACAGAAC TAAAATGCCA
 ACATAAAAAG ATGTTCATGA ATAATCATAA AACTGCAAAT TGAAACAATG GAGTATCATT
 TACCTAGGAG CTTGTCAAGT GAAAATAGTA GGTACTAAAT GCTAGTGAGG ATGCAATGAA
 ATGGGGGCAT TTATGCAGCG TTAGTGGGAG TAGAAATCCT TTTTGGATGA GTTTGTTATT
 ACTAAAATTT GAAATGACCC AACAATTACA ACTTTGGAAC TAAAAATATT TTAATGAAAA
 GAACAAGAAA ATGTGTAACG

Submitted Frequency for ss22367402

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
CEPH - MULTI-NATIONAL	184	G=0.73000002	A=0.27000001	0.394 +/-0.043			1_2004	SEQUENOM

dbSNP summary of Genotypes for ss22367402

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	224	224	G=0.68303573	A=0.31696430	G/G=0.49107143 A/G=0.38392857 A/A=0.12500000	Pr(chiSq=1.438,df=1) =0.251	Genotype Freq.
HapMap-HCB - EAST ASIA	86	86	G=0.52325583	A=0.47674417	A/G=0.53488374 G/G=0.25581396 A/A=0.20930232	Pr(chiSq=0.223,df=1) =0.655	Genotype Freq.
HapMap-JPT	168	168	G=0.52976191	A=0.47023809	A/G=0.44047618 G/G=0.30952382 A/A=0.25000000	Pr(chiSq=1.129,df=1) =0.294	Genotype Freq.
HAPMAP-ASW	96	96	G=0.78125000	A=0.21875000	G/G=0.58333331 A/G=0.39583334 A/A=0.02083333	Pr(chiSq=1.200,df=1) =0.294	Genotype Freq.
HAPMAP-CHB	82	82	G=0.56097561	A=0.43902439	A/G=0.39024389 G/G=0.36585367 A/A=0.24390244	Pr(chiSq=1.769,df=1) =0.200	Genotype Freq.
HAPMAP-CHD	170	170		A=0.50000000	A/G=0.43529412 A/A=0.28235295 G/G=0.28235295	Pr(chiSq=1.424,df=1) =0.251	Genotype Freq.
HAPMAP-GIH	176	176		A=0.50000000	A/G=0.45454547 A/A=0.27272728 G/G=0.27272728	Pr(chiSq=0.727,df=1) =0.403	Genotype Freq.
HAPMAP-LWK	178	178	G=0.72471911	A=0.27528089	G/G=0.51685393 A/G=0.41573033 A/A=0.06741573	Pr(chiSq=0.156,df=1) =0.752	Genotype Freq.
HAPMAP-MEX	98	98	G=0.75510204	A=0.24489796	G/G=0.55102038 A/G=0.40816328 A/A=0.04081633	Pr(chiSq=0.526,df=1) =0.479	Genotype Freq.
HAPMAP-MKK	282	282	G=0.77659577	A=0.22340426	G/G=0.58865249 A/G=0.37588653 A/A=0.03546099	Pr(chiSq=0.978,df=1) =0.343	Genotype Freq.
HAPMAP-TSI	176	176	G=0.75000000	A=0.25000000	G/G=0.52272725 A/G=0.45454547 A/A=0.02272727	Pr(chiSq=3.960,df=1) =0.050	Genotype Freq.

Submitted individual genotype for ss22367402

There is no individual genotype data for ss22367402.

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