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Submitted SNP(ss) Details: ss23143753           
Submitter
HandlePARC
Submitter SNP IDAPOB-006035
RefSNP(rs#)rs12720787
Submitted Batch IDAPOB-AFRICAN-051304
Submitted DateMay 17, 2004
Publication Cited[1] Pharmacogenetics and Risk of Cardiovascular Disease
First entry to dbSNPMay 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize48
PopulationPARC-AFRICAN-PANEL
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 9
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23143753|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 GGTTTATTGG ACTCACAGTT CCACGTGGCT GGGGAGGTCT CACAATCATG GCGGAAGGTG
 AGGGACAGCA AGTCACATCT TATGTAGATG GTGGCTGGCA AAGAGAGCTT GTGCAGAGAA
 ACTCCTGTTT TTAGAACCAT CAGATCTCCC GACACCCATC TGCAATCACG AGAACAGCAC
 GGGAAAGACC TGCCCCCATG ATTCAATCAC CTCCCCCCGG GTCCCTCCCA CAACACGTGG
 GAATTATGAG AGCTA
 S
 GAGACGAAAT TTGGGTGGGG ACGCAGAGCC AAACCATATC ACCATCCTTG CCCATTTTTC
 AGTTTTGCTA AACATTAGAT TCAGATGCCA GTCCTTTCTT GCCAAAATAG GCTGTGAGGC
 TTCTTTCTTT CCTATGCTTT ATTTTCTCCA AGACTTAACT GTATATGAGG GAGAGGGGTA
 TGGTGGCAGG AGGAAAGAGT GGTTTATTTT TTGGTCCTTG GTCTTCTCCA AATACAGAAG
 AGACTCCTGT TCTTG

  Submitted Frequency for ss23143753 back to top
There is no frequency submission for ss23143753.


  dbSNP summary of Genotypes for ss23143753 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PARC-AFRICAN-PANEL4848C=0.95833331
G=0.04166667C/C=0.91666669
C/G=0.08333334
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.
HapMap-YRI226226C=0.94247788
G=0.05752213C/C=0.88495576
C/G=0.11504425
Pr(chiSq=0.047,df=1)
=1.000
Genotype
Freq.
HAPMAP-ASW9898C=0.96938777
G=0.03061225C/C=0.93877554
C/G=0.06122449
Pr(chiSq=0.003,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180C=0.96111113
G=0.03888889C/C=0.92222220
C/G=0.07777778
Pr(chiSq=0.011,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK286286C=0.98601401
G=0.01398601C/C=0.97202796
C/G=0.02797203
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss23143753 back to top
There is no individual genotype data for ss23143753.

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