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Submitted SNP(ss) Details: ss23145044           
Submitter
HandlePERLEGEN
Submitter SNP IDafd0555957
RefSNP(rs#)rs17109619
Submitted Batch IDAFD_AFR_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize46
PopulationAFD_AFR_PANEL
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23145044|allelePos=101|len=201|taxid=9606|alleles='A/C'|mol=Genomic
 AAGCCTTAGG GGACCCTGGG CACTCAAACT CTCCATCCTA TGTCTCTGTT CCTCTTCGCA
 CATGTCCTTC GCTTTGTCTC TCTACAGT
 CCAGCTGCCT TC
 M
 TCTCTTCACA TA
 CTGAAAAGCA AACTGGCATT TCAAAATCTG AAGTGACTGA CAGCCTCTCA GCCCCATTTA
 CCAATTCCTC AGAAAGAATT AGTCTTTA

  Submitted Frequency for ss23145044 back to top
There is no frequency submission for ss23145044.


  dbSNP summary of Genotypes for ss23145044 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_AFR_PANEL
NORTH AMERICA
4646A=0.95652175
C=0.04347826A/A=0.91304350
A/C=0.08695652
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss23145044 back to top
There is no individual genotype data for ss23145044.