Submitted SNP(ss) Details: ss23145046

Submitted SNP(ss) Details: ss23145046

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd0555962
RefSNP(rs#)	rs17109623
Submitted Batch ID	AFD_AFR_18-MAY-2004
Submitted Date	Aug 20, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	46
Population	AFD_AFR_PANEL

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CTCTTGACAT GTGAGGATTA TGGGGATTAC AATTCAAAAT GAGATTTTGG GTGACACAGC
 CAAACCATAT CACTGTGCAT GGAACATT
 GGCCAGTGGA AT
 R
 TTAAGAAAAT GT
 ACCTGGTGTT CAACAATAAG ATAGTTTTCT TCAAGTGAGA AGTTTCCCCT CTTGTTTCTC
 TGTTGTTTGT GATGGAAACA CAATGGCA

Submitted Frequency for ss23145046

There is no frequency submission for ss23145046.

dbSNP summary of Genotypes for ss23145046

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	48	48	A=0.89583331	G=0.10416666	A/A=0.79166669 A/G=0.20833333	Pr(chiSq=0.064,df=1) =1.000	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	46	46	A=0.89130437	G=0.10869565	A/A=0.82608694 A/G=0.13043478 G/G=0.04347826	Pr(chiSq=2.457,df=1) =0.150	Genotype Freq.

Submitted individual genotype for ss23145046

There is no individual genotype data for ss23145046.

Disclaimer Privacy statement