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Submitted SNP(ss) Details: ss23145047           
Submitter
HandlePERLEGEN
Submitter SNP IDafd0555977
RefSNP(rs#)rs993971
Submitted Batch IDAFD_AFR_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize46
PopulationAFD_AFR_PANEL
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23145047|allelePos=101|len=201|taxid=9606|alleles='C/G'|mol=Genomic
 TCAGCTTTTA AATATTTTCA GAGCCAAGGA TTCCTGAATT CCTCAACTAT TCAAAATTAT
 TTCACCAACA ATGAGTATAC TACATGTT
 CCTGCTTTCA AT
 S
 TTGATCTATA AC
 CTATTACATT TGTTTTGATT ATGTAAACTA TGTACATTTC TAATTAAATT ACAGAGGGAA
 AGAATTAAGC AAGCCTCAAA TATAAGAA

  Submitted Frequency for ss23145047 back to top
There is no frequency submission for ss23145047.


  dbSNP summary of Genotypes for ss23145047 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_EUR_PANEL
NORTH AMERICA
4848C=0.89583331
G=0.10416666C/C=0.79166669
C/G=0.20833333
Pr(chiSq=0.064,df=1)
=1.000
Genotype
Freq.
AFD_AFR_PANEL
NORTH AMERICA
4646C=0.89130437
G=0.10869565C/C=0.82608694
C/G=0.13043478
G/G=0.04347826
Pr(chiSq=2.457,df=1)
=0.150
Genotype
Freq.

  Submitted individual genotype for ss23145047 back to top
There is no individual genotype data for ss23145047.