Submitted SNP(ss) Details: ss23145050

Submitted SNP(ss) Details: ss23145050

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd0556003
RefSNP(rs#)	rs10487981
Submitted Batch ID	AFD_AFR_18-MAY-2004
Submitted Date	Aug 20, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	46
Population	AFD_AFR_PANEL

Allele
Observed Allele	T/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c/t_g

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TCCTCACTCC ACATCAGTTC ATAAATAAGA GTGTAAACTT CCTTAGGTCA GGAATCTTGA
 TTTTATTTCT TTGTATCTTA GACAAGGC
 ATTATGCAAC CA
 Y
 GGGATAAGTG CG
 GTTCTAGAAG CCAAGAACAT CTGAGCGCCA ACTCTCTCTG CAGTGTCTCA CCTGTGAAGT
 TCATTAACCA CCCTGAAATA TAATATTC

Submitted Frequency for ss23145050

There is no frequency submission for ss23145050.

dbSNP summary of Genotypes for ss23145050

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	48	48	T=0.81250000	C=0.18750000	T/T=0.62500000 C/T=0.37500000	Pr(chiSq=0.434,df=1) =0.527	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	46	46	T=0.60869563	C=0.39130434	C/T=0.43478259 T/T=0.39130434 C/C=0.17391305	Pr(chiSq=0.175,df=1) =0.752	Genotype Freq.

Submitted individual genotype for ss23145050

There is no individual genotype data for ss23145050.

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