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Submitted SNP(ss) Details: ss23145052           
Submitter
HandlePERLEGEN
Submitter SNP IDafd0556038
RefSNP(rs#)rs17109664
Submitted Batch IDAFD_AFR_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize46
PopulationAFD_AFR_PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 10
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23145052|allelePos=101|len=201|taxid=9606|alleles='C/T'|mol=Genomic
 ATTAATAAAA AATGAATAAA GAAATACATA AATCCAGGAC ATGGAAAGTG AAATGCCTTC
 TGAAAGAAAT GGGTAATTAC GGGAAGAA
 ATGTTTCAAG GA
 Y
 GATTTTTTTA GG
 CCACAGCTGC ATATTGTTTT ATTTACTGGC CTGAGTATTT ATCACATAAA CTATTCTCCA
 CATTTAGGAA TAGTTTTAAA TAATTATG

  Submitted Frequency for ss23145052 back to top
There is no frequency submission for ss23145052.


  dbSNP summary of Genotypes for ss23145052 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_AFR_PANEL
NORTH AMERICA
4646C=0.97826087
T=0.02173913C/C=0.95652175
C/T=0.04347826
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-YRI226226C=0.97345132
T=0.02654867C/C=0.94690263
C/T=0.05309734
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.
HAPMAP-ASW9898C=0.98979592
T=0.01020408C/C=0.97959185
C/T=0.02040816
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180C=0.97222221
T=0.02777778C/C=0.94444442
C/T=0.05555556
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK286286C=0.99650347
T=0.00349650C/C=0.99300700
C/T=0.00699301
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss23145052 back to top
There is no individual genotype data for ss23145052.