NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss23145054           
Submitter
HandlePERLEGEN
Submitter SNP IDafd0556101
RefSNP(rs#)rs17099070
Submitted Batch IDAFD_AFR_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize46
PopulationAFD_AFR_PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23145054|allelePos=101|len=201|taxid=9606|alleles='C/T'|mol=Genomic
 AAAAGTTACA AAAACAATGT CAATCACATC CCTTTCTTAT TTTTACCAAC CTGCCATATT
 AATCATATTA GAATAATTTT CTCCCTCA
 TATAATGAGA CT
 Y
 GCTTTCTTAC CA
 TGGATCCAAA TCTAGAAGGA ATACCATTAT CATCATGTCT GAATAAAAGA TTCATTCCTG
 TTTCTTTTTC TGTTTCCCAT CCTATTAA

  Submitted Frequency for ss23145054 back to top
There is no frequency submission for ss23145054.


  dbSNP summary of Genotypes for ss23145054 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_AFR_PANEL
NORTH AMERICA
4646C=0.97826087
T=0.02173913C/C=0.95652175
C/T=0.04347826
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss23145054 back to top
There is no individual genotype data for ss23145054.