Submitted SNP(ss) Details: ss23145056

Submitted SNP(ss) Details: ss23145056

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd0556112
RefSNP(rs#)	rs323952
Submitted Batch ID	AFD_AFR_18-MAY-2004
Submitted Date	Aug 20, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	46
Population	AFD_AFR_PANEL

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c_g/a

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TTTTCTCTTT TCTGAGTGAA AATGCTGAAT GCAGTTCCTC TAGAAAAAAA TGCTTAACTT
 TCTGTCAACC TTCTGGTTTC CTTAGAGG
 ATTTGGTACA AC
 R
 TAGAAATGTG AT
 TGGCGATGTC TATTCTCAGG GGCCTGCCTC TCCTTTTGAA ATAAACAATG GGTTAGGCAG
 TCCCCTGAAG TATACAGGTA CCACTGAA

Submitted Frequency for ss23145056

There is no frequency submission for ss23145056.

dbSNP summary of Genotypes for ss23145056

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	48	48	A=0.75000000	G=0.25000000	A/A=0.62500000 A/G=0.25000000 G/G=0.12500000	Pr(chiSq=2.667,df=1) =0.150	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	42	42	A=0.57142860	G=0.42857143	A/G=0.47619048 A/A=0.33333334 G/G=0.19047619	Pr(chiSq=0.016,df=1) =1.000	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	48	48	A=0.77083331	G=0.22916667	A/A=0.58333331 A/G=0.37500000 G/G=0.04166667	Pr(chiSq=0.091,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss23145056

There is no individual genotype data for ss23145056.

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