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Submitted SNP(ss) Details: ss23145057           
Submitter
HandlePERLEGEN
Submitter SNP IDafd0556167
RefSNP(rs#)rs323964
Submitted Batch IDAFD_AFR_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize46
PopulationAFD_AFR_PANEL
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23145057|allelePos=101|len=201|taxid=9606|alleles='G/T'|mol=Genomic
 GTATCATTAC TTTGAATTTG ATTTGTGAGC ATTACACAAA AAGCTGTATA TGCCTGTATT
 TGATAAACAG AAGCATCTGA CTTTGATT
 TGCATTACTA TA
 K
 TTGGATTCTT CA
 GTGATTGCTT GAAATGGCTC ATGTTGATCC TTATATATCT TTCTTTTCTT CCTTCCTTCC
 TTCATTCCCT TCCTCCTTCC TTCCTTCC

  Submitted Frequency for ss23145057 back to top
There is no frequency submission for ss23145057.


  dbSNP summary of Genotypes for ss23145057 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_AFR_PANEL
NORTH AMERICA
4646T=0.50000000G/T=0.47826087
G/G=0.26086956
T/T=0.26086956
Pr(chiSq=0.043,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss23145057 back to top
There is no individual genotype data for ss23145057.