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Submitted SNP(ss) Details: ss23145058           
Submitter
HandlePERLEGEN
Submitter SNP IDafd0556266
RefSNP(rs#)rs17101444
Submitted Batch IDAFD_AFR_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize46
PopulationAFD_AFR_PANEL
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 7
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23145058|allelePos=101|len=201|taxid=9606|alleles='G/A'|mol=Genomic
 TGTAAGAACC CAAAAGATTT AAGCTCCATT AGCTAAGAAT AAAATGCTGA TAACCATGAG
 TCACAGCCAT GGTTTGGATG TACTCAGA
 AAAGTTAACT AC
 R
 TAAAAAAATG TC
 ACCTTCTTAT TCAGCATATT AGCTCCCTGG GTGTTTTCAA GACATATCTG CTGGCTTTTC
 TTTTAAAATT ACACTTCCCT TAGCTACG

  Submitted Frequency for ss23145058 back to top
There is no frequency submission for ss23145058.


  dbSNP summary of Genotypes for ss23145058 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_EUR_PANEL
NORTH AMERICA
4848G=0.89583331
A=0.10416666G/G=0.79166669
A/G=0.20833333
Pr(chiSq=0.064,df=1)
=1.000
Genotype
Freq.
AFD_AFR_PANEL
NORTH AMERICA
4646G=0.82608694
A=0.17391305G/G=0.65217394
A/G=0.34782609
Pr(chiSq=0.324,df=1)
=0.584
Genotype
Freq.
HapMap-CEU116116G=0.92241377
A=0.07758620G/G=0.84482759
A/G=0.15517241
Pr(chiSq=0.061,df=1)
=1.000
Genotype
Freq.
HapMap-JPT8484G=0.94047618
A=0.05952381G/G=0.88095236
A/G=0.11904762
Pr(chiSq=0.019,df=1)
=1.000
Genotype
Freq.
HapMap-YRI114114G=0.79824561
A=0.20175439G/G=0.59649122
A/G=0.40350878
Pr(chiSq=1.321,df=1)
=0.251
Genotype
Freq.

  Submitted individual genotype for ss23145058 back to top
There is no individual genotype data for ss23145058.