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Submitted SNP(ss) Details: ss23145060           
Submitter
HandlePERLEGEN
Submitter SNP IDafd0556628
RefSNP(rs#)rs2786468
Submitted Batch IDAFD_AFR_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize46
PopulationAFD_AFR_PANEL
Allele
Observed AlleleG/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23145060|allelePos=101|len=201|taxid=9606|alleles='G/C'|mol=Genomic
 CCTTGTCACA TTTGTCTGGT TTTGTTTTTC TATAGAAAAT CAAAGCAAAC AAAGCAGCTC
 TCAGTAATGC ATTCTAAAAC TGTCATGA
 ATTAACTGAC CT
 S
 TGTAGAAATT TC
 CTTTTCCTGG GTCAATTCAG CAATTTTGTC CTGCTTGTTG TTTTCTAAAT ACATCAGTTT
 CATTTTGTGT TGAACATCAA AGCCCTCA

  Submitted Frequency for ss23145060 back to top
There is no frequency submission for ss23145060.


  dbSNP summary of Genotypes for ss23145060 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_EUR_PANEL
NORTH AMERICA
4848C=0.79166669
G=0.20833333C/C=0.62500000
C/G=0.33333334
G/G=0.04166667
Pr(chiSq=0.003,df=1)
=1.000
Genotype
Freq.
AFD_AFR_PANEL
NORTH AMERICA
4444C=0.77272725
G=0.22727273C/C=0.54545456
C/G=0.45454547
Pr(chiSq=0.767,df=1)
=0.403
Genotype
Freq.
AFD_CHN_PANEL
NORTH AMERICA
4848C=0.81250000
G=0.18750000C/C=0.70833331
C/G=0.20833333
G/G=0.08333334
Pr(chiSq=2.400,df=1)
=0.150
Genotype
Freq.

  Submitted individual genotype for ss23145060 back to top
There is no individual genotype data for ss23145060.