Submitted SNP(ss) Details: ss23145060

Submitted SNP(ss) Details: ss23145060

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd0556628
RefSNP(rs#)	rs2786468
Submitted Batch ID	AFD_AFR_18-MAY-2004
Submitted Date	Aug 20, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	46
Population	AFD_AFR_PANEL

Allele
Observed Allele	G/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CCTTGTCACA TTTGTCTGGT TTTGTTTTTC TATAGAAAAT CAAAGCAAAC AAAGCAGCTC
 TCAGTAATGC ATTCTAAAAC TGTCATGA
 ATTAACTGAC CT
 S
 TGTAGAAATT TC
 CTTTTCCTGG GTCAATTCAG CAATTTTGTC CTGCTTGTTG TTTTCTAAAT ACATCAGTTT
 CATTTTGTGT TGAACATCAA AGCCCTCA

Submitted Frequency for ss23145060

There is no frequency submission for ss23145060.

dbSNP summary of Genotypes for ss23145060

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	48	48	C=0.79166669	G=0.20833333	C/C=0.62500000 C/G=0.33333334 G/G=0.04166667	Pr(chiSq=0.003,df=1) =1.000	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	44	44	C=0.77272725	G=0.22727273	C/C=0.54545456 C/G=0.45454547	Pr(chiSq=0.767,df=1) =0.403	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	48	48	C=0.81250000	G=0.18750000	C/C=0.70833331 C/G=0.20833333 G/G=0.08333334	Pr(chiSq=2.400,df=1) =0.150	Genotype Freq.

Submitted individual genotype for ss23145060

There is no individual genotype data for ss23145060.

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