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Submitted SNP(ss) Details: ss23145063           
Submitter
HandlePERLEGEN
Submitter SNP IDafd1130675
RefSNP(rs#)rs4657642
Submitted Batch IDAFD_AFR_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize46
PopulationAFD_AFR_PANEL
Allele
Observed AlleleT/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23145063|allelePos=101|len=201|taxid=9606|alleles='T/G'|mol=Genomic
 TAGCCTCTTC CTCTCCATCC CACGTCCACT GTGCACATTC TTCAGAGCTG GCAAGAGTCA
 CTGACAGGAC ATGGCACCCA TGGTTTGA
 AGCGCCGACT TT
 K
 CTCTGCAGGT GG
 CCCAGAGCCA GTGAAGGACT TTCTTGAAGC ACATAGCACG CCATGGTCAT ACAACGGCGA
 TATGTAGCCT GGGTGTCACT CACTGAGA

  Submitted Frequency for ss23145063 back to top
There is no frequency submission for ss23145063.


  dbSNP summary of Genotypes for ss23145063 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_EUR_PANEL
NORTH AMERICA
4848T=0.70833331
G=0.29166666T/T=0.50000000
G/T=0.41666666
G/G=0.08333334
Pr(chiSq=0.002,df=1)
=1.000
Genotype
Freq.
AFD_AFR_PANEL
NORTH AMERICA
4646G=0.54347825
T=0.45652175G/T=0.47826087
G/G=0.30434781
T/T=0.21739130
Pr(chiSq=0.030,df=1)
=1.000
Genotype
Freq.
AFD_CHN_PANEL
NORTH AMERICA
4848G=0.56250000
T=0.43750000G/G=0.41666666
T/T=0.29166666
G/T=0.29166666
Pr(chiSq=3.984,df=1)
=0.050
Genotype
Freq.

  Submitted individual genotype for ss23145063 back to top
There is no individual genotype data for ss23145063.