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Submitted SNP(ss) Details: ss23145065           
Submitter
HandlePERLEGEN
Submitter SNP IDafd1130677
RefSNP(rs#)rs4657644
Submitted Batch IDAFD_AFR_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize46
PopulationAFD_AFR_PANEL
Allele
Observed AlleleT/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23145065|allelePos=101|len=201|taxid=9606|alleles='T/G'|mol=Genomic
 ACGCCATGGT CATACAACGG CGATATGTAG CCTGGGTGTC ACTCACTGAG ACACATTTCC
 TCCCTCCACC CCCACCCATC TTTCTTAA
 AATTTAGCAT TT
 K
 CTGGACAAGA TC
 AGGCTTACTA TAAGACAGTG CTTAGAAAAA CTGATGTTAA GATGGAAAAA ATAAGGGAAG
 GAGAGGGAAG AAAAGGTGGG AAAGAGAT

  Submitted Frequency for ss23145065 back to top
There is no frequency submission for ss23145065.


  dbSNP summary of Genotypes for ss23145065 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_EUR_PANEL
NORTH AMERICA
4848T=0.91666669
G=0.08333334T/T=0.83333331
G/T=0.16666667
Pr(chiSq=0.032,df=1)
=1.000
Genotype
Freq.
AFD_AFR_PANEL
NORTH AMERICA
4646T=0.69565219
G=0.30434781T/T=0.47826087
G/T=0.43478259
G/G=0.08695652
Pr(chiSq=0.017,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss23145065 back to top
There is no individual genotype data for ss23145065.