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Submitted SNP(ss) Details: ss23145066           
Submitter
HandlePERLEGEN
Submitter SNP IDafd1130679
RefSNP(rs#)rs16858623
Submitted Batch IDAFD_AFR_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize46
PopulationAFD_AFR_PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23145066|allelePos=101|len=201|taxid=9606|alleles='A/G'|mol=Genomic
 AATAAATCCA GCGATAATGG GAAGAGTGTG ATGTGAGGCA GAGCTAACAT CACAGAGATC
 CCAGGGAACA TTATTTTTCC CTCTCCTT
 TCTAAAGACA CC
 R
 TAAAAAGCTC CA
 GATTTTTCTT TCTGAGTGGT GACTGCTTTA AAGAATATAA AATCTGAGAT ACTGTGAACC
 CCCACATGAT TTCACCTCTG GCAACTGA

  Submitted Frequency for ss23145066 back to top
There is no frequency submission for ss23145066.


  dbSNP summary of Genotypes for ss23145066 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_AFR_PANEL
NORTH AMERICA
4646A=0.93478262
G=0.06521739A/A=0.86956519
A/G=0.13043478
Pr(chiSq=0.014,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss23145066 back to top
There is no individual genotype data for ss23145066.